Berger B - Search Results

1

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes.

Numanagić I, Malikić S, Ford M, Qin X, Toji L, Radovich M, Skaar TC, Pratt VM, Berger B, Scherer S, Sahinalp SC. Numanagić I, et al. Among authors: berger b. Nat Commun. 2018 Feb 26;9(1):828. doi: 10.1038/s41467-018-03273-1. Nat Commun. 2018. PMID: 29483503 Free PMC article.

2

Compressive genomics.

Loh PR, Baym M, Berger B. Loh PR, et al. Among authors: berger b. Nat Biotechnol. 2012 Jul 10;30(7):627-30. doi: 10.1038/nbt.2241. Nat Biotechnol. 2012. PMID: 22781691 No abstract available.

3

Reconstructing Austronesian population history in Island Southeast Asia.

Lipson M, Loh PR, Patterson N, Moorjani P, Ko YC, Stoneking M, Berger B, Reich D. Lipson M, et al. Among authors: berger b. Nat Commun. 2014 Aug 19;5:4689. doi: 10.1038/ncomms5689. Nat Commun. 2014. PMID: 25137359 Free PMC article.

4

An exact arithmetic toolbox for a consistent and reproducible structural analysis of metabolic network models.

Chindelevitch L, Trigg J, Regev A, Berger B. Chindelevitch L, et al. Among authors: berger b. Nat Commun. 2014 Oct 7;5:4893. doi: 10.1038/ncomms5893. Nat Commun. 2014. PMID: 25291352 Free PMC article.

5

Quality score compression improves genotyping accuracy.

Yu YW, Yorukoglu D, Peng J, Berger B. Yu YW, et al. Among authors: berger b. Nat Biotechnol. 2015 Mar;33(3):240-3. doi: 10.1038/nbt.3170. Nat Biotechnol. 2015. PMID: 25748910 Free PMC article. No abstract available.

6

Reply to "Do genome-scale models need exact solvers or clearer standards?".

Chindelevitch L, Trigg J, Regev A, Berger B. Chindelevitch L, et al. Among authors: berger b. Mol Syst Biol. 2015 Oct 14;11(10):830. doi: 10.15252/msb.20156548. Mol Syst Biol. 2015. PMID: 26467283 Free PMC article. No abstract available.

7

Compressive mapping for next-generation sequencing.

Yorukoglu D, Yu YW, Peng J, Berger B. Yorukoglu D, et al. Among authors: berger b. Nat Biotechnol. 2016 Apr;34(4):374-6. doi: 10.1038/nbt.3511. Nat Biotechnol. 2016. PMID: 27054987 Free PMC article. No abstract available.

8

Fast genotyping of known SNPs through approximate k-mer matching.

Shajii A, Yorukoglu D, William Yu Y, Berger B. Shajii A, et al. Among authors: berger b. Bioinformatics. 2016 Sep 1;32(17):i538-i544. doi: 10.1093/bioinformatics/btw460. Bioinformatics. 2016. PMID: 27587672 Free PMC article.

9

Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream Analyses.

Shajii A, Numanagić I, Berger B. Shajii A, et al. Among authors: berger b. Res Comput Mol Biol. 2018 Apr;10812:280-282. Res Comput Mol Biol. 2018. PMID: 29888346 Free PMC article. No abstract available.

10

Statistical Binning for Barcoded Reads Improves Downstream Analyses.

Shajii A, Numanagić I, Whelan C, Berger B. Shajii A, et al. Among authors: berger b. Cell Syst. 2018 Aug 22;7(2):219-226.e5. doi: 10.1016/j.cels.2018.07.005. Cell Syst. 2018. PMID: 30138581 Free PMC article.

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