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Multisite Evaluation of Next-Generation Methods for Small RNA Quantification.
Herbert ZT, Thimmapuram J, Xie S, Kershner JP, Kolling FW, Ringelberg CS, LeClerc A, Alekseyev YO, Fan J, Podnar JW, Stevenson HS, Sommerville G, Gupta S, Berkeley M, Koeman J, Perera A, Scott AR, Grenier JK, Malik J, Ashton JM, Pivarski KL, Wang X, Kuffel G, Mesa TE, Smith AT, Shen J, Takata Y, Volkert TL, Love JA, Zhang Y, Wang J, Xuei X, Adams M, Levine SS. Herbert ZT, et al. Among authors: berkeley m. J Biomol Tech. 2020 Jul;31(2):47-56. doi: 10.7171/jbt.20-3102-001. J Biomol Tech. 2020. PMID: 31966025 Free PMC article.
Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.
Herbert ZT, Kershner JP, Butty VL, Thimmapuram J, Choudhari S, Alekseyev YO, Fan J, Podnar JW, Wilcox E, Gipson J, Gillaspy A, Jepsen K, BonDurant SS, Morris K, Berkeley M, LeClerc A, Simpson SD, Sommerville G, Grimmett L, Adams M, Levine SS. Herbert ZT, et al. Among authors: berkeley m. BMC Genomics. 2018 Mar 15;19(1):199. doi: 10.1186/s12864-018-4585-1. BMC Genomics. 2018. PMID: 29703133 Free PMC article.
BUSCO: Assessing Genomic Data Quality and Beyond.
Manni M, Berkeley MR, Seppey M, Zdobnov EM. Manni M, et al. Among authors: berkeley mr. Curr Protoc. 2021 Dec;1(12):e323. doi: 10.1002/cpz1.323. Curr Protoc. 2021. PMID: 34936221
OrthoDB in 2020: evolutionary and functional annotations of orthologs.
Zdobnov EM, Kuznetsov D, Tegenfeldt F, Manni M, Berkeley M, Kriventseva EV. Zdobnov EM, et al. Among authors: berkeley m. Nucleic Acids Res. 2021 Jan 8;49(D1):D389-D393. doi: 10.1093/nar/gkaa1009. Nucleic Acids Res. 2021. PMID: 33196836 Free PMC article.
Novel 199 base pair NEFH promoter drives expression in retinal ganglion cells.
Millington-Ward S, Chadderton N, Berkeley M, Finnegan LK, Hanlon KS, Carrigan M, Humphries P, Kenna PF, Palfi A, Farrar GJ. Millington-Ward S, et al. Among authors: berkeley m. Sci Rep. 2020 Oct 5;10(1):16515. doi: 10.1038/s41598-020-73257-z. Sci Rep. 2020. PMID: 33020509 Free PMC article.
26 results