Berman BP - Search Results

1

Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.

Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CP, van Dijk CM, Tollenaar RA, Van Den Berg D, Laird PW. Berman BP, et al. Nat Genet. 2011 Nov 27;44(1):40-6. doi: 10.1038/ng.969. Nat Genet. 2011. PMID: 22120008 Free PMC article.

2

Locking in on the human methylome.

Berman BP, Weisenberger DJ, Laird PW. Berman BP, et al. Nat Biotechnol. 2009 Apr;27(4):341-2. doi: 10.1038/nbt0409-341. Nat Biotechnol. 2009. PMID: 19352369 No abstract available.

3

Functional enhancers at the gene-poor 8q24 cancer-linked locus.

Jia L, Landan G, Pomerantz M, Jaschek R, Herman P, Reich D, Yan C, Khalid O, Kantoff P, Oh W, Manak JR, Berman BP, Henderson BE, Frenkel B, Haiman CA, Freedman M, Tanay A, Coetzee GA. Jia L, et al. Among authors: berman bp. PLoS Genet. 2009 Aug;5(8):e1000597. doi: 10.1371/journal.pgen.1000597. Epub 2009 Aug 14. PLoS Genet. 2009. PMID: 19680443 Free PMC article.

4

Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma.

Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, Verhaak RG, Hoadley KA, Hayes DN, Perou CM, Schmidt HK, Ding L, Wilson RK, Van Den Berg D, Shen H, Bengtsson H, Neuvial P, Cope LM, Buckley J, Herman JG, Baylin SB, Laird PW, Aldape K; Cancer Genome Atlas Research Network. Noushmehr H, et al. Among authors: berman bp. Cancer Cell. 2010 May 18;17(5):510-22. doi: 10.1016/j.ccr.2010.03.017. Epub 2010 Apr 15. Cancer Cell. 2010. PMID: 20399149 Free PMC article.

5

Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells.

Chung TL, Brena RM, Kolle G, Grimmond SM, Berman BP, Laird PW, Pera MF, Wolvetang EJ. Chung TL, et al. Among authors: berman bp. Stem Cells. 2010 Oct;28(10):1848-55. doi: 10.1002/stem.493. Stem Cells. 2010. PMID: 20687155

6

Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells.

Andreu-Vieyra C, Lai J, Berman BP, Frenkel B, Jia L, Jones PA, Coetzee GA. Andreu-Vieyra C, et al. Among authors: berman bp. Mol Cell Biol. 2011 Dec;31(23):4648-62. doi: 10.1128/MCB.05934-11. Epub 2011 Oct 3. Mol Cell Biol. 2011. PMID: 21969603 Free PMC article.

7

Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion.

Little GH, Noushmehr H, Baniwal SK, Berman BP, Coetzee GA, Frenkel B. Little GH, et al. Among authors: berman bp. Nucleic Acids Res. 2012 Apr;40(8):3538-47. doi: 10.1093/nar/gkr1219. Epub 2011 Dec 19. Nucleic Acids Res. 2012. PMID: 22187159 Free PMC article.

8

FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.

Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H. Coetzee SG, et al. Among authors: berman bp. Nucleic Acids Res. 2012 Oct;40(18):e139. doi: 10.1093/nar/gks542. Epub 2012 Jun 8. Nucleic Acids Res. 2012. PMID: 22684628 Free PMC article.

9

Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data.

Liu Y, Siegmund KD, Laird PW, Berman BP. Liu Y, et al. Among authors: berman bp. Genome Biol. 2012 Jul 11;13(7):R61. doi: 10.1186/gb-2012-13-7-r61. Genome Biol. 2012. PMID: 22784381 Free PMC article.

10

Comprehensive molecular characterization of human colon and rectal cancer.

Cancer Genome Atlas Network. Cancer Genome Atlas Network. Nature. 2012 Jul 18;487(7407):330-7. doi: 10.1038/nature11252. Nature. 2012. PMID: 22810696 Free PMC article.

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