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Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription.
Bermejo R, Lai MS, Foiani M. Bermejo R, et al. Mol Cell. 2012 Mar 30;45(6):710-8. doi: 10.1016/j.molcel.2012.03.001. Mol Cell. 2012. PMID: 22464441 Review.
Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation.
Bermejo R, Doksani Y, Capra T, Katou YM, Tanaka H, Shirahige K, Foiani M. Bermejo R, et al. Genes Dev. 2007 Aug 1;21(15):1921-36. doi: 10.1101/gad.432107. Genes Dev. 2007. PMID: 17671091 Free PMC article.
Replicon dynamics, dormant origin firing, and terminal fork integrity after double-strand break formation.
Doksani Y, Bermejo R, Fiorani S, Haber JE, Foiani M. Doksani Y, et al. Among authors: bermejo r. Cell. 2009 Apr 17;137(2):247-58. doi: 10.1016/j.cell.2009.02.016. Epub 2009 Apr 9. Cell. 2009. PMID: 19361851 Free PMC article.
Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription.
Bermejo R, Capra T, Gonzalez-Huici V, Fachinetti D, Cocito A, Natoli G, Katou Y, Mori H, Kurokawa K, Shirahige K, Foiani M. Bermejo R, et al. Cell. 2009 Sep 4;138(5):870-84. doi: 10.1016/j.cell.2009.06.022. Cell. 2009. PMID: 19737516
ChIP-on-chip analysis of DNA topoisomerases.
Bermejo R, Katou YM, Shirahige K, Foiani M. Bermejo R, et al. Methods Mol Biol. 2009;582:103-18. doi: 10.1007/978-1-60761-340-4_9. Methods Mol Biol. 2009. PMID: 19763945
Replication termination at eukaryotic chromosomes is mediated by Top2 and occurs at genomic loci containing pausing elements.
Fachinetti D, Bermejo R, Cocito A, Minardi S, Katou Y, Kanoh Y, Shirahige K, Azvolinsky A, Zakian VA, Foiani M. Fachinetti D, et al. Among authors: bermejo r. Mol Cell. 2010 Aug 27;39(4):595-605. doi: 10.1016/j.molcel.2010.07.024. Mol Cell. 2010. PMID: 20797631 Free PMC article.
Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
Gómez-González B, García-Rubio M, Bermejo R, Gaillard H, Shirahige K, Marín A, Foiani M, Aguilera A. Gómez-González B, et al. Among authors: bermejo r. EMBO J. 2011 Jun 24;30(15):3106-19. doi: 10.1038/emboj.2011.206. EMBO J. 2011. PMID: 21701562 Free PMC article.
The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.
Bermejo R, Capra T, Jossen R, Colosio A, Frattini C, Carotenuto W, Cocito A, Doksani Y, Klein H, Gómez-González B, Aguilera A, Katou Y, Shirahige K, Foiani M. Bermejo R, et al. Cell. 2011 Jul 22;146(2):233-46. doi: 10.1016/j.cell.2011.06.033. Cell. 2011. PMID: 21784245 Free PMC article.
Cnn1 inhibits the interactions between the KMN complexes of the yeast kinetochore.
Bock LJ, Pagliuca C, Kobayashi N, Grove RA, Oku Y, Shrestha K, Alfieri C, Golfieri C, Oldani A, Dal Maschio M, Bermejo R, Hazbun TR, Tanaka TU, De Wulf P. Bock LJ, et al. Among authors: bermejo r. Nat Cell Biol. 2012 May 6;14(6):614-24. doi: 10.1038/ncb2495. Nat Cell Biol. 2012. PMID: 22561345 Free PMC article.
Preserving the genome by regulating chromatin association with the nuclear envelope.
Bermejo R, Kumar A, Foiani M. Bermejo R, et al. Trends Cell Biol. 2012 Sep;22(9):465-73. doi: 10.1016/j.tcb.2012.05.007. Epub 2012 Jul 5. Trends Cell Biol. 2012. PMID: 22771046 Review.
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