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Identifiers.org: Compact Identifier services in the cloud.
Bioinformatics. 2021 Jul 19;37(12):1781-1782. doi: 10.1093/bioinformatics/btaa864.
Bioinformatics. 2021.
PMID: 33031499
Free PMC article.
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.
Deutsch EW, Csordas A, Sun Z, Jarnuczak A, Perez-Riverol Y, Ternent T, Campbell DS, Bernal-Llinares M, Okuda S, Kawano S, Moritz RL, Carver JJ, Wang M, Ishihama Y, Bandeira N, Hermjakob H, Vizcaíno JA.
Deutsch EW, et al. Among authors: bernal llinares m.
Nucleic Acids Res. 2017 Jan 4;45(D1):D1100-D1106. doi: 10.1093/nar/gkw936. Epub 2016 Oct 18.
Nucleic Acids Res. 2017.
PMID: 27924013
Free PMC article.
Item in Clipboard
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt.
Ochoa D, Hercules A, Carmona M, Suveges D, Baker J, Malangone C, Lopez I, Miranda A, Cruz-Castillo C, Fumis L, Bernal-Llinares M, Tsukanov K, Cornu H, Tsirigos K, Razuvayevskaya O, Buniello A, Schwartzentruber J, Karim M, Ariano B, Martinez Osorio RE, Ferrer J, Ge X, Machlitt-Northen S, Gonzalez-Uriarte A, Saha S, Tirunagari S, Mehta C, Roldán-Romero JM, Horswell S, Young S, Ghoussaini M, Hulcoop DG, Dunham I, McDonagh EM.
Ochoa D, et al. Among authors: bernal llinares m.
Nucleic Acids Res. 2023 Jan 6;51(D1):D1353-D1359. doi: 10.1093/nar/gkac1046.
Nucleic Acids Res. 2023.
PMID: 36399499
Free PMC article.
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The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Perez-Riverol Y, Csordas A, Bai J, Bernal-Llinares M, Hewapathirana S, Kundu DJ, Inuganti A, Griss J, Mayer G, Eisenacher M, Pérez E, Uszkoreit J, Pfeuffer J, Sachsenberg T, Yilmaz S, Tiwary S, Cox J, Audain E, Walzer M, Jarnuczak AF, Ternent T, Brazma A, Vizcaíno JA.
Perez-Riverol Y, et al. Among authors: bernal llinares m.
Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450. doi: 10.1093/nar/gky1106.
Nucleic Acids Res. 2019.
PMID: 30395289
Free PMC article.
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HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.
Bryan K, Jarboui MA, Raso C, Bernal-Llinares M, McCann B, Rauch J, Boldt K, Lynn DJ.
Bryan K, et al. Among authors: bernal llinares m.
J Proteome Res. 2016 Jun 3;15(6):2072-9. doi: 10.1021/acs.jproteome.5b01008. Epub 2016 May 16.
J Proteome Res. 2016.
PMID: 27086506
Free article.
Item in Clipboard
Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks.
Muetze T, Goenawan IH, Wiencko HL, Bernal-Llinares M, Bryan K, Lynn DJ.
Muetze T, et al. Among authors: bernal llinares m.
F1000Res. 2016 Jul 19;5:1745. doi: 10.12688/f1000research.9118.2. eCollection 2016.
F1000Res. 2016.
PMID: 27853512
Free PMC article.
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Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D.
Kennedy SA, Jarboui MA, Srihari S, Raso C, Bryan K, Dernayka L, Charitou T, Bernal-Llinares M, Herrera-Montavez C, Krstic A, Matallanas D, Kotlyar M, Jurisica I, Curak J, Wong V, Stagljar I, LeBihan T, Imrie L, Pillai P, Lynn MA, Fasterius E, Al-Khalili Szigyarto C, Breen J, Kiel C, Serrano L, Rauch N, Rukhlenko O, Kholodenko BN, Iglesias-Martinez LF, Ryan CJ, Pilkington R, Cammareri P, Sansom O, Shave S, Auer M, Horn N, Klose F, Ueffing M, Boldt K, Lynn DJ, Kolch W.
Kennedy SA, et al. Among authors: bernal llinares m.
Nat Commun. 2020 Jan 24;11(1):499. doi: 10.1038/s41467-019-14224-9.
Nat Commun. 2020.
PMID: 31980649
Free PMC article.
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A decoupled, modular and scriptable architecture for tools to curate data platforms.
Langenstein M, Hermjakob H, Bernal Llinares M.
Langenstein M, et al. Among authors: bernal llinares m.
Bioinformatics. 2021 Oct 25;37(20):3693-3694. doi: 10.1093/bioinformatics/btab233.
Bioinformatics. 2021.
PMID: 33830216
Free PMC article.
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