Bernhart SH - Search Results

1

ViennaRNA Package 2.0.

Lorenz R, Bernhart SH, Höner Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL. Lorenz R, et al. Among authors: bernhart sh. Algorithms Mol Biol. 2011 Nov 24;6:26. doi: 10.1186/1748-7188-6-26. Algorithms Mol Biol. 2011. PMID: 22115189 Free PMC article.

2

DREAM and RB cooperate to induce gene repression and cell-cycle arrest in response to p53 activation.

Uxa S, Bernhart SH, Mages CFS, Fischer M, Kohler R, Hoffmann S, Stadler PF, Engeland K, Müller GA. Uxa S, et al. Among authors: bernhart sh. Nucleic Acids Res. 2019 Sep 26;47(17):9087-9103. doi: 10.1093/nar/gkz635. Nucleic Acids Res. 2019. PMID: 31400114 Free PMC article.

3

Alignment of RNA base pairing probability matrices.

Hofacker IL, Bernhart SH, Stadler PF. Hofacker IL, et al. Among authors: bernhart sh. Bioinformatics. 2004 Sep 22;20(14):2222-7. doi: 10.1093/bioinformatics/bth229. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073017

4

Thermodynamics of RNA-RNA binding.

Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Mückstein U, et al. Among authors: bernhart sh. Bioinformatics. 2006 May 15;22(10):1177-82. doi: 10.1093/bioinformatics/btl024. Epub 2006 Jan 29. Bioinformatics. 2006. PMID: 16446276

5

Partition function and base pairing probabilities of RNA heterodimers.

Bernhart SH, Tafer H, Mückstein U, Flamm C, Stadler PF, Hofacker IL. Bernhart SH, et al. Algorithms Mol Biol. 2006 Mar 16;1(1):3. doi: 10.1186/1748-7188-1-3. Algorithms Mol Biol. 2006. PMID: 16722605 Free PMC article.

6

Invertebrate 7SK snRNAs.

Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ. Gruber AR, et al. J Mol Evol. 2008 Feb;66(2):107-15. doi: 10.1007/s00239-007-9052-6. Epub 2008 Jan 12. J Mol Evol. 2008. PMID: 18193315 Free PMC article.

7

Strategies for measuring evolutionary conservation of RNA secondary structures.

Gruber AR, Bernhart SH, Hofacker IL, Washietl S. Gruber AR, et al. Among authors: bernhart sh. BMC Bioinformatics. 2008 Feb 26;9:122. doi: 10.1186/1471-2105-9-122. BMC Bioinformatics. 2008. PMID: 18302738 Free PMC article.

8

The Vienna RNA websuite.

Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL. Gruber AR, et al. Among authors: bernhart sh. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. doi: 10.1093/nar/gkn188. Epub 2008 Apr 19. Nucleic Acids Res. 2008. PMID: 18424795 Free PMC article.

9

RNAalifold: improved consensus structure prediction for RNA alignments.

Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. Bernhart SH, et al. BMC Bioinformatics. 2008 Nov 11;9:474. doi: 10.1186/1471-2105-9-474. BMC Bioinformatics. 2008. PMID: 19014431 Free PMC article.

10

From consensus structure prediction to RNA gene finding.

Bernhart SH, Hofacker IL. Bernhart SH, et al. Brief Funct Genomic Proteomic. 2009 Nov;8(6):461-71. doi: 10.1093/bfgp/elp043. Brief Funct Genomic Proteomic. 2009. PMID: 19833701 Review.

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