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TOPCONS: consensus prediction of membrane protein topology.
Bernsel A, Viklund H, Hennerdal A, Elofsson A. Bernsel A, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W465-8. doi: 10.1093/nar/gkp363. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429891 Free PMC article.
Membrane insertion of marginally hydrophobic transmembrane helices depends on sequence context.
Hedin LE, Ojemalm K, Bernsel A, Hennerdal A, IllergÄrd K, Enquist K, Kauko A, Cristobal S, von Heijne G, Lerch-Bader M, Nilsson I, Elofsson A. Hedin LE, et al. Among authors: bernsel a. J Mol Biol. 2010 Feb 12;396(1):221-9. doi: 10.1016/j.jmb.2009.11.036. Epub 2009 Nov 18. J Mol Biol. 2010. PMID: 19931281
Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why?
Bernsel A, Daley DO. Bernsel A, et al. Trends Microbiol. 2009 Oct;17(10):444-9. doi: 10.1016/j.tim.2009.07.005. Epub 2009 Sep 16. Trends Microbiol. 2009. PMID: 19766000
SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.
Viklund H, Bernsel A, Skwark M, Elofsson A. Viklund H, et al. Among authors: bernsel a. Bioinformatics. 2008 Dec 15;24(24):2928-9. doi: 10.1093/bioinformatics/btn550. Epub 2008 Oct 22. Bioinformatics. 2008. PMID: 18945683
Prediction of membrane-protein topology from first principles.
Bernsel A, Viklund H, Falk J, Lindahl E, von Heijne G, Elofsson A. Bernsel A, et al. Proc Natl Acad Sci U S A. 2008 May 20;105(20):7177-81. doi: 10.1073/pnas.0711151105. Epub 2008 May 13. Proc Natl Acad Sci U S A. 2008. PMID: 18477697 Free PMC article.
Remote homology detection of integral membrane proteins using conserved sequence features.
Bernsel A, Viklund H, Elofsson A. Bernsel A, et al. Proteins. 2008 May 15;71(3):1387-99. doi: 10.1002/prot.21825. Proteins. 2008. PMID: 18076048
Improved membrane protein topology prediction by domain assignments.
Bernsel A, Von Heijne G. Bernsel A, et al. Protein Sci. 2005 Jul;14(7):1723-8. doi: 10.1110/ps.051395305. Protein Sci. 2005. PMID: 15987901 Free PMC article.
Molecular code for transmembrane-helix recognition by the Sec61 translocon.
Hessa T, Meindl-Beinker NM, Bernsel A, Kim H, Sato Y, Lerch-Bader M, Nilsson I, White SH, von Heijne G. Hessa T, et al. Among authors: bernsel a. Nature. 2007 Dec 13;450(7172):1026-30. doi: 10.1038/nature06387. Nature. 2007. PMID: 18075582
Disulfide bond formation and cysteine exclusion in gram-positive bacteria.
Daniels R, Mellroth P, Bernsel A, Neiers F, Normark S, von Heijne G, Henriques-Normark B. Daniels R, et al. Among authors: bernsel a. J Biol Chem. 2010 Jan 29;285(5):3300-9. doi: 10.1074/jbc.M109.081398. Epub 2009 Nov 24. J Biol Chem. 2010. PMID: 19940132 Free PMC article.
Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments.
Schow EV, Freites JA, Cheng P, Bernsel A, von Heijne G, White SH, Tobias DJ. Schow EV, et al. Among authors: bernsel a. J Membr Biol. 2011 Jan;239(1-2):35-48. doi: 10.1007/s00232-010-9330-x. Epub 2010 Dec 3. J Membr Biol. 2011. PMID: 21127848 Free PMC article. Review.
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