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RNA catalysis through compartmentalization.
Strulson CA, Molden RC, Keating CD, Bevilacqua PC. Strulson CA, et al. Among authors: bevilacqua pc. Nat Chem. 2012 Nov;4(11):941-6. doi: 10.1038/nchem.1466. Epub 2012 Oct 14. Nat Chem. 2012. PMID: 23089870
General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme.
Nakano S, Chadalavada DM, Bevilacqua PC. Nakano S, et al. Among authors: bevilacqua pc. Science. 2000 Feb 25;287(5457):1493-7. doi: 10.1126/science.287.5457.1493. Science. 2000. PMID: 10688799
A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme.
Chadalavada DM, Knudsen SM, Nakano S, Bevilacqua PC. Chadalavada DM, et al. Among authors: bevilacqua pc. J Mol Biol. 2000 Aug 11;301(2):349-67. doi: 10.1006/jmbi.2000.3953. J Mol Biol. 2000. PMID: 10926514
Straightening of bulged RNA by the double-stranded RNA-binding domain from the protein kinase PKR.
Zheng X, Bevilacqua PC. Zheng X, et al. Among authors: bevilacqua pc. Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14162-7. doi: 10.1073/pnas.011355798. Proc Natl Acad Sci U S A. 2000. PMID: 11114159 Free PMC article.
Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism.
Nakano S, Proctor DJ, Bevilacqua PC. Nakano S, et al. Among authors: bevilacqua pc. Biochemistry. 2001 Oct 9;40(40):12022-38. doi: 10.1021/bi011253n. Biochemistry. 2001. PMID: 11580278
Proton inventory of the genomic HDV ribozyme in Mg(2+)-containing solutions.
Nakano S, Bevilacqua PC. Nakano S, et al. Among authors: bevilacqua pc. J Am Chem Soc. 2001 Nov 14;123(45):11333-4. doi: 10.1021/ja0166850. J Am Chem Soc. 2001. PMID: 11697993 No abstract available.
The folding pathway of the genomic hepatitis delta virus ribozyme is dominated by slow folding of the pseudoknots.
Chadalavada DM, Senchak SE, Bevilacqua PC. Chadalavada DM, et al. Among authors: bevilacqua pc. J Mol Biol. 2002 Apr 5;317(4):559-75. doi: 10.1006/jmbi.2002.5434. J Mol Biol. 2002. PMID: 11955009
Battle for the bulge: directing small molecules to DNA and RNA defects.
Bevilacqua PC. Bevilacqua PC. Chem Biol. 2002 Aug;9(8):854-5. doi: 10.1016/s1074-5521(02)00197-7. Chem Biol. 2002. PMID: 12204683 Review.
Isolation and characterization of a family of stable RNA tetraloops with the motif YNMG that participate in tertiary interactions.
Proctor DJ, Schaak JE, Bevilacqua JM, Falzone CJ, Bevilacqua PC. Proctor DJ, et al. Among authors: bevilacqua jm, bevilacqua pc. Biochemistry. 2002 Oct 8;41(40):12062-75. doi: 10.1021/bi026201s. Biochemistry. 2002. PMID: 12356306
A mechanistic framework for co-transcriptional folding of the HDV genomic ribozyme in the presence of downstream sequence.
Diegelman-Parente A, Bevilacqua PC. Diegelman-Parente A, et al. Among authors: bevilacqua pc. J Mol Biol. 2002 Nov 15;324(1):1-16. doi: 10.1016/s0022-2836(02)01027-6. J Mol Biol. 2002. PMID: 12421555
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