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Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.
Mirzazadeh R, Kallas T, Bienko M, Crosetto N. Mirzazadeh R, et al. Among authors: bienko m. Methods Mol Biol. 2018;1672:167-194. doi: 10.1007/978-1-4939-7306-4_14. Methods Mol Biol. 2018. PMID: 29043625
Role of UbL family modifiers and their binding proteins in cell signaling.
van Wijk SJ, Bienko M, Dikic I. van Wijk SJ, et al. Among authors: bienko m. Methods Mol Biol. 2012;832:163-71. doi: 10.1007/978-1-61779-474-2_11. Methods Mol Biol. 2012. PMID: 22350884
Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.
Crosetto N, Mitra A, Silva MJ, Bienko M, Dojer N, Wang Q, Karaca E, Chiarle R, Skrzypczak M, Ginalski K, Pasero P, Rowicka M, Dikic I. Crosetto N, et al. Among authors: bienko m. Nat Methods. 2013 Apr;10(4):361-5. doi: 10.1038/nmeth.2408. Epub 2013 Mar 17. Nat Methods. 2013. PMID: 23503052 Free PMC article.
Spatially resolved transcriptomics and beyond.
Crosetto N, Bienko M, van Oudenaarden A. Crosetto N, et al. Among authors: bienko m. Nat Rev Genet. 2015 Jan;16(1):57-66. doi: 10.1038/nrg3832. Epub 2014 Dec 2. Nat Rev Genet. 2015. PMID: 25446315 Review.
Genome-wide maps of nuclear lamina interactions in single human cells.
Kind J, Pagie L, de Vries SS, Nahidiazar L, Dey SS, Bienko M, Zhan Y, Lajoie B, de Graaf CA, Amendola M, Fudenberg G, Imakaev M, Mirny LA, Jalink K, Dekker J, van Oudenaarden A, van Steensel B. Kind J, et al. Among authors: bienko m. Cell. 2015 Sep 24;163(1):134-47. doi: 10.1016/j.cell.2015.08.040. Epub 2015 Sep 10. Cell. 2015. PMID: 26365489 Free PMC article.
Massive and parallel expression profiling using microarrayed single-cell sequencing.
Vickovic S, Ståhl PL, Salmén F, Giatrellis S, Westholm JO, Mollbrink A, Navarro JF, Custodio J, Bienko M, Sutton LA, Rosenquist R, Frisén J, Lundeberg J. Vickovic S, et al. Among authors: bienko m. Nat Commun. 2016 Oct 14;7:13182. doi: 10.1038/ncomms13182. Nat Commun. 2016. PMID: 27739429 Free PMC article.
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.
Yan WX, Mirzazadeh R, Garnerone S, Scott D, Schneider MW, Kallas T, Custodio J, Wernersson E, Li Y, Gao L, Federova Y, Zetsche B, Zhang F, Bienko M, Crosetto N. Yan WX, et al. Among authors: bienko m. Nat Commun. 2017 May 12;8:15058. doi: 10.1038/ncomms15058. Nat Commun. 2017. PMID: 28497783 Free PMC article.
An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.
Gelali E, Custodio J, Girelli G, Wernersson E, Crosetto N, Bienko M. Gelali E, et al. Among authors: bienko m. Methods Mol Biol. 2018;1766:303-333. doi: 10.1007/978-1-4939-7768-0_17. Methods Mol Biol. 2018. PMID: 29605860
., Proc Natl Acad Sci U S A 109:21301-21306, 2012; Bienko et al., Nat Methods 10:122-124, 2012), as well as improvements in the resolution of microscopy technologies, have boosted the number of DNA FISH applications, particularly in the field of genome architecture (Markak …
., Proc Natl Acad Sci U S A 109:21301-21306, 2012; Bienko et al., Nat Methods 10:122-124, 2012), as well as improvements in the resol …
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.
Gelali E, Girelli G, Matsumoto M, Wernersson E, Custodio J, Mota A, Schweitzer M, Ferenc K, Li X, Mirzazadeh R, Agostini F, Schell JP, Lanner F, Crosetto N, Bienko M. Gelali E, et al. Among authors: bienko m. Nat Commun. 2019 Apr 9;10(1):1636. doi: 10.1038/s41467-019-09616-w. Nat Commun. 2019. PMID: 30967549 Free PMC article.
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.
Zhang X, Garnerone S, Simonetti M, Harbers L, Nicoś M, Mirzazadeh R, Venesio T, Sapino A, Hartman J, Marchiò C, Bienko M, Crosetto N. Zhang X, et al. Among authors: bienko m. Nat Commun. 2019 Oct 18;10(1):4732. doi: 10.1038/s41467-019-12570-2. Nat Commun. 2019. PMID: 31628304 Free PMC article.
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