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Phosphoinositide-dependent protein kinase 1, a sensor of protein conformation.
Biondi RM. Biondi RM. Trends Biochem Sci. 2004 Mar;29(3):136-42. doi: 10.1016/j.tibs.2004.01.005. Trends Biochem Sci. 2004. PMID: 15003271 Review.
Random insertion of GFP into the cAMP-dependent protein kinase regulatory subunit from Dictyostelium discoideum.
Biondi RM, Baehler PJ, Reymond CD, Véron M. Biondi RM, et al. Nucleic Acids Res. 1998 Nov 1;26(21):4946-52. doi: 10.1093/nar/26.21.4946. Nucleic Acids Res. 1998. PMID: 9776758 Free PMC article.
Identification of a pocket in the PDK1 kinase domain that interacts with PIF and the C-terminal residues of PKA.
Biondi RM, Cheung PC, Casamayor A, Deak M, Currie RA, Alessi DR. Biondi RM, et al. EMBO J. 2000 Mar 1;19(5):979-88. doi: 10.1093/emboj/19.5.979. EMBO J. 2000. PMID: 10698939 Free PMC article.
A 3-phosphoinositide-dependent protein kinase-1 (PDK1) docking site is required for the phosphorylation of protein kinase Czeta (PKCzeta ) and PKC-related kinase 2 by PDK1.
Balendran A, Biondi RM, Cheung PC, Casamayor A, Deak M, Alessi DR. Balendran A, et al. Among authors: biondi rm. J Biol Chem. 2000 Jul 7;275(27):20806-13. doi: 10.1074/jbc.M000421200. J Biol Chem. 2000. PMID: 10764742
The PIF-binding pocket in PDK1 is essential for activation of S6K and SGK, but not PKB.
Biondi RM, Kieloch A, Currie RA, Deak M, Alessi DR. Biondi RM, et al. EMBO J. 2001 Aug 15;20(16):4380-90. doi: 10.1093/emboj/20.16.4380. EMBO J. 2001. PMID: 11500365 Free PMC article.
Bi-functional, substrate mimicking RNA inhibits MSK1-mediated cAMP-response element-binding protein phosphorylation and reveals magnesium ion-dependent conformational changes of the kinase.
Hamm J, Alessi DR, Biondi RM. Hamm J, et al. Among authors: biondi rm. J Biol Chem. 2002 Nov 29;277(48):45793-802. doi: 10.1074/jbc.M205072200. Epub 2002 Sep 13. J Biol Chem. 2002. PMID: 12235136
A phosphoserine/threonine-binding pocket in AGC kinases and PDK1 mediates activation by hydrophobic motif phosphorylation.
Frödin M, Antal TL, Dümmler BA, Jensen CJ, Deak M, Gammeltoft S, Biondi RM. Frödin M, et al. Among authors: biondi rm. EMBO J. 2002 Oct 15;21(20):5396-407. doi: 10.1093/emboj/cdf551. EMBO J. 2002. PMID: 12374740 Free PMC article.
Signalling specificity of Ser/Thr protein kinases through docking-site-mediated interactions.
Biondi RM, Nebreda AR. Biondi RM, et al. Biochem J. 2003 May 15;372(Pt 1):1-13. doi: 10.1042/BJ20021641. Biochem J. 2003. PMID: 12600273 Free PMC article. Review.
Allosteric activation of the protein kinase PDK1 with low molecular weight compounds.
Engel M, Hindie V, Lopez-Garcia LA, Stroba A, Schaeffer F, Adrian I, Imig J, Idrissova L, Nastainczyk W, Zeuzem S, Alzari PM, Hartmann RW, Piiper A, Biondi RM. Engel M, et al. Among authors: biondi rm. EMBO J. 2006 Nov 29;25(23):5469-80. doi: 10.1038/sj.emboj.7601416. Epub 2006 Nov 16. EMBO J. 2006. PMID: 17110931 Free PMC article.
3,5-Diphenylpent-2-enoic acids as allosteric activators of the protein kinase PDK1: structure-activity relationships and thermodynamic characterization of binding as paradigms for PIF-binding pocket-targeting compounds.
Stroba A, Schaeffer F, Hindie V, Lopez-Garcia L, Adrian I, Fröhner W, Hartmann RW, Biondi RM, Engel M. Stroba A, et al. Among authors: biondi rm. J Med Chem. 2009 Aug 13;52(15):4683-93. doi: 10.1021/jm9001499. J Med Chem. 2009. PMID: 19606904
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