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Mechanisms of alternative pre-messenger RNA splicing.
Black DL. Black DL. Annu Rev Biochem. 2003;72:291-336. doi: 10.1146/annurev.biochem.72.121801.161720. Epub 2003 Feb 27. Annu Rev Biochem. 2003. PMID: 12626338 Review.
Deep-learning augmented RNA-seq analysis of transcript splicing.
Zhang Z, Pan Z, Ying Y, Xie Z, Adhikari S, Phillips J, Carstens RP, Black DL, Wu Y, Xing Y. Zhang Z, et al. Among authors: black dl. Nat Methods. 2019 Apr;16(4):307-310. doi: 10.1038/s41592-019-0351-9. Epub 2019 Mar 25. Nat Methods. 2019. PMID: 30923373
Splicing Activation by Rbfox Requires Self-Aggregation through Its Tyrosine-Rich Domain.
Ying Y, Wang XJ, Vuong CK, Lin CH, Damianov A, Black DL. Ying Y, et al. Among authors: black dl. Cell. 2017 Jul 13;170(2):312-323.e10. doi: 10.1016/j.cell.2017.06.022. Cell. 2017. PMID: 28708999 Free PMC article.
Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR.
Damianov A, Ying Y, Lin CH, Lee JA, Tran D, Vashisht AA, Bahrami-Samani E, Xing Y, Martin KC, Wohlschlegel JA, Black DL. Damianov A, et al. Cell. 2016 Apr 21;165(3):606-19. doi: 10.1016/j.cell.2016.03.040. Cell. 2016. PMID: 27104978 Free PMC article.
The neurogenetics of alternative splicing.
Vuong CK, Black DL, Zheng S. Vuong CK, et al. Nat Rev Neurosci. 2016 May;17(5):265-81. doi: 10.1038/nrn.2016.27. Nat Rev Neurosci. 2016. PMID: 27094079 Free PMC article. Review.
Cytoplasmic Rbfox1 Regulates the Expression of Synaptic and Autism-Related Genes.
Lee JA, Damianov A, Lin CH, Fontes M, Parikshak NN, Anderson ES, Geschwind DH, Black DL, Martin KC. Lee JA, et al. Neuron. 2016 Jan 6;89(1):113-28. doi: 10.1016/j.neuron.2015.11.025. Epub 2015 Dec 10. Neuron. 2016. PMID: 26687839 Free PMC article.
Alternative pre-mRNA splicing in neurons: growing up and extending its reach.
Zheng S, Black DL. Zheng S, et al. Trends Genet. 2013 Aug;29(8):442-8. doi: 10.1016/j.tig.2013.04.003. Epub 2013 May 3. Trends Genet. 2013. PMID: 23648015 Free PMC article. Review.
The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function.
Gehman LT, Meera P, Stoilov P, Shiue L, O'Brien JE, Meisler MH, Ares M Jr, Otis TS, Black DL. Gehman LT, et al. Genes Dev. 2012 Mar 1;26(5):445-60. doi: 10.1101/gad.182477.111. Epub 2012 Feb 22. Genes Dev. 2012. PMID: 22357600 Free PMC article.
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