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HLA typing from RNA-Seq sequence reads.
Boegel S, Löwer M, Schäfer M, Bukur T, de Graaf J, Boisguérin V, Türeci O, Diken M, Castle JC, Sahin U. Boegel S, et al. Genome Med. 2012 Dec 22;4(12):102. doi: 10.1186/gm403. eCollection 2012. Genome Med. 2012. PMID: 23259685 Free PMC article.
Mutated tumor alleles are expressed according to their DNA frequency.
Castle JC, Loewer M, Boegel S, Tadmor AD, Boisguerin V, de Graaf J, Paret C, Diken M, Kreiter S, Türeci Ö, Sahin U. Castle JC, et al. Among authors: boegel s. Sci Rep. 2014 Apr 22;4:4743. doi: 10.1038/srep04743. Sci Rep. 2014. PMID: 24752137 Free PMC article.
Mutant MHC class II epitopes drive therapeutic immune responses to cancer.
Kreiter S, Vormehr M, van de Roemer N, Diken M, Löwer M, Diekmann J, Boegel S, Schrörs B, Vascotto F, Castle JC, Tadmor AD, Schoenberger SP, Huber C, Türeci Ö, Sahin U. Kreiter S, et al. Among authors: boegel s. Nature. 2015 Apr 30;520(7549):692-6. doi: 10.1038/nature14426. Epub 2015 Apr 22. Nature. 2015. PMID: 25901682 Free PMC article.
MHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection.
Rozanov DV, Rozanov ND, Chiotti KE, Reddy A, Wilmarth PA, David LL, Cha SW, Woo S, Pevzner P, Bafna V, Burrows GG, Rantala JK, Levin T, Anur P, Johnson-Camacho K, Tabatabaei S, Munson DJ, Bruno TC, Slansky JE, Kappler JW, Hirano N, Boegel S, Fox BA, Egelston C, Simons DL, Jimenez G, Lee PP, Gray JW, Spellman PT. Rozanov DV, et al. Among authors: boegel s. J Proteomics. 2018 Mar 30;176:13-23. doi: 10.1016/j.jprot.2018.01.004. Epub 2018 Jan 10. J Proteomics. 2018. PMID: 29331515 Free PMC article.
HLA and proteasome expression body map.
Boegel S, Löwer M, Bukur T, Sorn P, Castle JC, Sahin U. Boegel S, et al. BMC Med Genomics. 2018 Mar 27;11(1):36. doi: 10.1186/s12920-018-0354-x. BMC Med Genomics. 2018. PMID: 29587858 Free PMC article.
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