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Experiences with workflows for automating data-intensive bioinformatics.
Spjuth O, Bongcam-Rudloff E, Hernández GC, Forer L, Giovacchini M, Guimera RV, Kallio A, Korpelainen E, Kańduła MM, Krachunov M, Kreil DP, Kulev O, Łabaj PP, Lampa S, Pireddu L, Schönherr S, Siretskiy A, Vassilev D. Spjuth O, et al. Biol Direct. 2015 Aug 19;10:43. doi: 10.1186/s13062-015-0071-8. Biol Direct. 2015. PMID: 26282399 Free PMC article.
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.
Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK. Corpas M, et al. Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4. Bioinformatics. 2015. PMID: 25189782 Free PMC article.
GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.
Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium. Attwood TK, et al. PLoS Comput Biol. 2015 Apr 9;11(4):e1004143. doi: 10.1371/journal.pcbi.1004143. eCollection 2015 Apr. PLoS Comput Biol. 2015. PMID: 25856076 Free PMC article.
The eBioKit, a stand-alone educational platform for bioinformatics.
Hernández-de-Diego R, de Villiers EP, Klingström T, Gourlé H, Conesa A, Bongcam-Rudloff E. Hernández-de-Diego R, et al. PLoS Comput Biol. 2017 Sep 14;13(9):e1005616. doi: 10.1371/journal.pcbi.1005616. eCollection 2017 Sep. PLoS Comput Biol. 2017. PMID: 28910280 Free PMC article.
Simulating Illumina metagenomic data with InSilicoSeq.
Gourlé H, Karlsson-Lindsjö O, Hayer J, Bongcam-Rudloff E. Gourlé H, et al. Bioinformatics. 2019 Feb 1;35(3):521-522. doi: 10.1093/bioinformatics/bty630. Bioinformatics. 2019. PMID: 30016412 Free PMC article.
Workshop on laboratory protocol standards for the Molecular Methods Database.
Klingström T, Soldatova L, Stevens R, Roos TE, Swertz MA, Müller KM, Kalaš M, Lambrix P, Taussig MJ, Litton JE, Landegren U, Bongcam-Rudloff E. Klingström T, et al. N Biotechnol. 2013 Jan 25;30(2):109-13. doi: 10.1016/j.nbt.2012.05.019. Epub 2012 Jun 2. N Biotechnol. 2013. PMID: 22687389
100 results