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APL regulates vascular tissue identity in Arabidopsis.
Bonke M, Thitamadee S, Mähönen AP, Hauser MT, Helariutta Y. Bonke M, et al. Nature. 2003 Nov 13;426(6963):181-6. doi: 10.1038/nature02100. Nature. 2003. PMID: 14614507
Counting absolute numbers of molecules using unique molecular identifiers.
Kivioja T, Vähärautio A, Karlsson K, Bonke M, Enge M, Linnarsson S, Taipale J. Kivioja T, et al. Among authors: bonke m. Nat Methods. 2011 Nov 20;9(1):72-4. doi: 10.1038/nmeth.1778. Nat Methods. 2011. PMID: 22101854
Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation.
Parizot B, Laplaze L, Ricaud L, Boucheron-Dubuisson E, Bayle V, Bonke M, De Smet I, Poethig SR, Helariutta Y, Haseloff J, Chriqui D, Beeckman T, Nussaume L. Parizot B, et al. Among authors: bonke m. Plant Physiol. 2008 Jan;146(1):140-8. doi: 10.1104/pp.107.107870. Epub 2007 Nov 9. Plant Physiol. 2008. PMID: 17993548 Free PMC article.
A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root.
Mähönen AP, Bonke M, Kauppinen L, Riikonen M, Benfey PN, Helariutta Y. Mähönen AP, et al. Among authors: bonke m. Genes Dev. 2000 Dec 1;14(23):2938-43. doi: 10.1101/gad.189200. Genes Dev. 2000. PMID: 11114883 Free PMC article.
Transcriptional networks controlling the cell cycle.
Bonke M, Turunen M, Sokolova M, Vähärautio A, Kivioja T, Taipale M, Björklund M, Taipale J. Bonke M, et al. G3 (Bethesda). 2013 Jan;3(1):75-90. doi: 10.1534/g3.112.004283. Epub 2013 Jan 1. G3 (Bethesda). 2013. PMID: 23316440 Free PMC article.
Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo.
Wei GH, Badis G, Berger MF, Kivioja T, Palin K, Enge M, Bonke M, Jolma A, Varjosalo M, Gehrke AR, Yan J, Talukder S, Turunen M, Taipale M, Stunnenberg HG, Ukkonen E, Hughes TR, Bulyk ML, Taipale J. Wei GH, et al. Among authors: bonke m. EMBO J. 2010 Jul 7;29(13):2147-60. doi: 10.1038/emboj.2010.106. Epub 2010 Jun 1. EMBO J. 2010. PMID: 20517297 Free PMC article.
Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.
Jolma A, Kivioja T, Toivonen J, Cheng L, Wei G, Enge M, Taipale M, Vaquerizas JM, Yan J, Sillanpää MJ, Bonke M, Palin K, Talukder S, Hughes TR, Luscombe NM, Ukkonen E, Taipale J. Jolma A, et al. Among authors: bonke m. Genome Res. 2010 Jun;20(6):861-73. doi: 10.1101/gr.100552.109. Epub 2010 Apr 8. Genome Res. 2010. PMID: 20378718 Free PMC article.
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