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Fused Regression for Multi-source Gene Regulatory Network Inference.
Lam KY, Westrick ZM, Müller CL, Christiaen L, Bonneau R. Lam KY, et al. Among authors: bonneau r. PLoS Comput Biol. 2016 Dec 6;12(12):e1005157. doi: 10.1371/journal.pcbi.1005157. eCollection 2016 Dec. PLoS Comput Biol. 2016. PMID: 27923054 Free PMC article.
The coat morphogenetic protein SpoVID is necessary for spore encasement in Bacillus subtilis.
Wang KH, Isidro AL, Domingues L, Eskandarian HA, McKenney PT, Drew K, Grabowski P, Chua MH, Barry SN, Guan M, Bonneau R, Henriques AO, Eichenberger P. Wang KH, et al. Among authors: bonneau r. Mol Microbiol. 2009 Nov;74(3):634-49. doi: 10.1111/j.1365-2958.2009.06886.x. Epub 2009 Sep 22. Mol Microbiol. 2009. PMID: 19775244 Free PMC article.
A predictive model for transcriptional control of physiology in a free living cell.
Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS. Bonneau R, et al. Cell. 2007 Dec 28;131(7):1354-65. doi: 10.1016/j.cell.2007.10.053. Cell. 2007. PMID: 18160043
Multi-species integrative biclustering.
Waltman P, Kacmarczyk T, Bate AR, Kearns DB, Reiss DJ, Eichenberger P, Bonneau R. Waltman P, et al. Among authors: bonneau r. Genome Biol. 2010;11(9):R96. doi: 10.1186/gb-2010-11-9-r96. Epub 2010 Sep 29. Genome Biol. 2010. PMID: 20920250 Free PMC article.
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.
Arrieta-Ortiz ML, Hafemeister C, Bate AR, Chu T, Greenfield A, Shuster B, Barry SN, Gallitto M, Liu B, Kacmarczyk T, Santoriello F, Chen J, Rodrigues CD, Sato T, Rudner DZ, Driks A, Bonneau R, Eichenberger P. Arrieta-Ortiz ML, et al. Among authors: bonneau r. Mol Syst Biol. 2015 Nov 17;11(11):839. doi: 10.15252/msb.20156236. Mol Syst Biol. 2015. PMID: 26577401 Free PMC article.
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