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ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite.
Petrotchenko EV, Borchers CH. Petrotchenko EV, et al. Among authors: borchers ch. BMC Bioinformatics. 2010 Jan 28;11:64. doi: 10.1186/1471-2105-11-64. BMC Bioinformatics. 2010. PMID: 20109223 Free PMC article.
Matrix-assisted laser desorption/ionization directed nano-electrospray ionization tandem mass spectrometric analysis for protein identification.
Kast J, Parker CE, van der Drift K, Dial JM, Milgram SL, Wilm M, Howell M, Borchers CH. Kast J, et al. Among authors: borchers ch. Rapid Commun Mass Spectrom. 2003;17(16):1825-34. doi: 10.1002/rcm.1114. Rapid Commun Mass Spectrom. 2003. PMID: 12876682
Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes.
Petrotchenko EV, Olkhovik VK, Borchers CH. Petrotchenko EV, et al. Among authors: borchers ch. Mol Cell Proteomics. 2005 Aug;4(8):1167-79. doi: 10.1074/mcp.T400016-MCP200. Epub 2005 May 18. Mol Cell Proteomics. 2005. PMID: 15901824
Identification of components of protein complexes.
Parker CE, Warren MR, Loiselle DR, Dicheva NN, Scarlett CO, Borchers CH. Parker CE, et al. Among authors: borchers ch. Methods Mol Biol. 2005;301:117-51. doi: 10.1385/1-59259-895-1:117. Methods Mol Biol. 2005. PMID: 15917630
Protein arrays for biomarker discovery.
Reid JD, Parker CE, Borchers CH. Reid JD, et al. Among authors: borchers ch. Curr Opin Mol Ther. 2007 Jun;9(3):216-21. Curr Opin Mol Ther. 2007. PMID: 17608019 Review.
BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics.
Petrotchenko EV, Xiao K, Cable J, Chen Y, Dokholyan NV, Borchers CH. Petrotchenko EV, et al. Among authors: borchers ch. Mol Cell Proteomics. 2009 Feb;8(2):273-86. doi: 10.1074/mcp.M800265-MCP200. Epub 2008 Oct 6. Mol Cell Proteomics. 2009. PMID: 18838738
Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry.
Han J, Danell RM, Patel JR, Gumerov DR, Scarlett CO, Speir JP, Parker CE, Rusyn I, Zeisel S, Borchers CH. Han J, et al. Among authors: borchers ch. Metabolomics. 2008 Jun;4(2):128-140. doi: 10.1007/s11306-008-0104-8. Metabolomics. 2008. PMID: 19081807 Free PMC article.
Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response.
Lippert DN, Ralph SG, Phillips M, White R, Smith D, Hardie D, Gershenzon J, Ritland K, Borchers CH, Bohlmann J. Lippert DN, et al. Among authors: borchers ch. Proteomics. 2009 Jan;9(2):350-67. doi: 10.1002/pmic.200800252. Proteomics. 2009. PMID: 19105170
Top-down proteomics on a high-field Fourier transform ion cyclotron resonance mass spectrometer.
Ouvry-Patat SA, Torres MP, Gelfand CA, Quek HH, Easterling M, Speir JP, Borchers CH. Ouvry-Patat SA, et al. Among authors: borchers ch. Methods Mol Biol. 2009;492:215-31. doi: 10.1007/978-1-59745-493-3_12. Methods Mol Biol. 2009. PMID: 19241035
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma.
Kuzyk MA, Smith D, Yang J, Cross TJ, Jackson AM, Hardie DB, Anderson NL, Borchers CH. Kuzyk MA, et al. Among authors: borchers ch. Mol Cell Proteomics. 2009 Aug;8(8):1860-77. doi: 10.1074/mcp.M800540-MCP200. Epub 2009 May 1. Mol Cell Proteomics. 2009. PMID: 19411661 Free PMC article.
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