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Microbial genomes: dealing with diversity.
Boucher Y, Nesbø CL, Doolittle WF. Boucher Y, et al. Curr Opin Microbiol. 2001 Jun;4(3):285-9. doi: 10.1016/s1369-5274(00)00204-6. Curr Opin Microbiol. 2001. PMID: 11378480 Review.
Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation.
Koenig JE, Bourne DG, Curtis B, Dlutek M, Stokes HW, Doolittle WF, Boucher Y. Koenig JE, et al. Among authors: boucher y. ISME J. 2011 Jun;5(6):962-72. doi: 10.1038/ismej.2010.193. Epub 2011 Jan 27. ISME J. 2011. PMID: 21270840 Free PMC article.
Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments.
Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF. Koenig JE, et al. Among authors: boucher y. Environ Microbiol. 2008 Apr;10(4):1024-38. doi: 10.1111/j.1462-2920.2007.01524.x. Epub 2008 Jan 7. Environ Microbiol. 2008. PMID: 18190517
Lateral gene transfer and phylogenetic assignment of environmental fosmid clones.
Nesbø CL, Boucher Y, Dlutek M, Doolittle WF. Nesbø CL, et al. Among authors: boucher y. Environ Microbiol. 2005 Dec;7(12):2011-26. doi: 10.1111/j.1462-2920.2005.00918.x. Environ Microbiol. 2005. PMID: 16309397
Complex histories of genes encoding 3-hydroxy-3-methylglutaryl-CoenzymeA reductase.
Gophna U, Thompson JR, Boucher Y, Doolittle WF. Gophna U, et al. Among authors: boucher y. Mol Biol Evol. 2006 Jan;23(1):168-78. doi: 10.1093/molbev/msj019. Epub 2005 Sep 14. Mol Biol Evol. 2006. PMID: 16162862
Phylogenetic reconstruction and lateral gene transfer.
Bapteste E, Boucher Y, Leigh J, Doolittle WF. Bapteste E, et al. Among authors: boucher y. Trends Microbiol. 2004 Sep;12(9):406-11. doi: 10.1016/j.tim.2004.07.002. Trends Microbiol. 2004. PMID: 15337161 Review.
Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes.
Boucher Y, Douady CJ, Sharma AK, Kamekura M, Doolittle WF. Boucher Y, et al. J Bacteriol. 2004 Jun;186(12):3980-90. doi: 10.1128/JB.186.12.3980-3990.2004. J Bacteriol. 2004. PMID: 15175312 Free PMC article.
Origins and evolution of isoprenoid lipid biosynthesis in archaea.
Boucher Y, Kamekura M, Doolittle WF. Boucher Y, et al. Mol Microbiol. 2004 Apr;52(2):515-27. doi: 10.1111/j.1365-2958.2004.03992.x. Mol Microbiol. 2004. PMID: 15066037
Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information.
Blouin C, Boucher Y, Roger AJ. Blouin C, et al. Among authors: boucher y. Nucleic Acids Res. 2003 Jan 15;31(2):790-7. doi: 10.1093/nar/gkg151. Nucleic Acids Res. 2003. PMID: 12527789 Free PMC article.
How big is the iceberg of which organellar genes in nuclear genomes are but the tip?
Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ. Doolittle WF, et al. Among authors: boucher y. Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):39-57; discussion 57-8. doi: 10.1098/rstb.2002.1185. Philos Trans R Soc Lond B Biol Sci. 2003. PMID: 12594917 Free PMC article. Review.
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