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Page 1
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations.
Branco MR, Pombo A. Branco MR, et al. PLoS Biol. 2006 May;4(5):e138. doi: 10.1371/journal.pbio.0040138. Epub 2006 Apr 25. PLoS Biol. 2006. PMID: 16623600 Free PMC article.
Chromosome organization: new facts, new models.
Branco MR, Pombo A. Branco MR, et al. Trends Cell Biol. 2007 Mar;17(3):127-34. doi: 10.1016/j.tcb.2006.12.006. Epub 2007 Jan 2. Trends Cell Biol. 2007. PMID: 17197184 Review.
Functional organisation of the genome during interphase.
Pombo A, Branco MR. Pombo A, et al. Among authors: branco mr. Curr Opin Genet Dev. 2007 Oct;17(5):451-5. doi: 10.1016/j.gde.2007.08.008. Epub 2007 Oct 24. Curr Opin Genet Dev. 2007. PMID: 17920259 Review.
Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH.
Branco MR, Branco T, Ramirez F, Pombo A. Branco MR, et al. Among authors: branco t. Chromosome Res. 2008;16(3):413-26. doi: 10.1007/s10577-008-1230-x. Chromosome Res. 2008. PMID: 18461481
Complex multi-enhancer contacts captured by genome architecture mapping.
Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A. Beagrie RA, et al. Among authors: branco mr. Nature. 2017 Mar 23;543(7646):519-524. doi: 10.1038/nature21411. Epub 2017 Mar 8. Nature. 2017. PMID: 28273065 Free PMC article.
Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.
Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A. Barbieri M, et al. Among authors: branco mr. Nat Struct Mol Biol. 2017 Jun;24(6):515-524. doi: 10.1038/nsmb.3402. Epub 2017 Apr 24. Nat Struct Mol Biol. 2017. PMID: 28436944
Poised transcription factories prime silent uPA gene prior to activation.
Ferrai C, Xie SQ, Luraghi P, Munari D, Ramirez F, Branco MR, Pombo A, Crippa MP. Ferrai C, et al. Among authors: branco mr. PLoS Biol. 2010 Jan;8(1):e1000270. doi: 10.1371/journal.pbio.1000270. Epub 2010 Jan 5. PLoS Biol. 2010. PMID: 20052287 Free PMC article.
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.
Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W. Ficz G, et al. Among authors: branco mr. Nature. 2011 May 19;473(7347):398-402. doi: 10.1038/nature10008. Epub 2011 Apr 3. Nature. 2011. PMID: 21460836
Uncovering the role of 5-hydroxymethylcytosine in the epigenome.
Branco MR, Ficz G, Reik W. Branco MR, et al. Nat Rev Genet. 2011 Nov 15;13(1):7-13. doi: 10.1038/nrg3080. Nat Rev Genet. 2011. PMID: 22083101 Review.
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.
Booth MJ, Branco MR, Ficz G, Oxley D, Krueger F, Reik W, Balasubramanian S. Booth MJ, et al. Among authors: branco mr. Science. 2012 May 18;336(6083):934-7. doi: 10.1126/science.1220671. Epub 2012 Apr 26. Science. 2012. PMID: 22539555