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14 results
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Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes.
Richardson CD, Ray GJ, Bray NL, Corn JE. Richardson CD, et al. Among authors: bray nl. Nat Commun. 2016 Aug 17;7:12463. doi: 10.1038/ncomms12463. Nat Commun. 2016. PMID: 27530320 Free PMC article.
CRISPR-Cas9 genome editing in human cells occurs via the Fanconi anemia pathway.
Richardson CD, Kazane KR, Feng SJ, Zelin E, Bray NL, Schäfer AJ, Floor SN, Corn JE. Richardson CD, et al. Among authors: bray nl. Nat Genet. 2018 Aug;50(8):1132-1139. doi: 10.1038/s41588-018-0174-0. Epub 2018 Jul 27. Nat Genet. 2018. PMID: 30054595
Pseudoalignment for metagenomic read assignment.
Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L. Schaeffer L, et al. Bioinformatics. 2017 Jul 15;33(14):2082-2088. doi: 10.1093/bioinformatics/btx106. Bioinformatics. 2017. PMID: 28334086 Free PMC article.
AVID: A global alignment program.
Bray N, Dubchak I, Pachter L. Bray N, et al. Genome Res. 2003 Jan;13(1):97-102. doi: 10.1101/gr.789803. Genome Res. 2003. PMID: 12529311 Free PMC article.
Controlled Cycling and Quiescence Enables Efficient HDR in Engraftment-Enriched Adult Hematopoietic Stem and Progenitor Cells.
Shin JJ, Schröder MS, Caiado F, Wyman SK, Bray NL, Bordi M, Dewitt MA, Vu JT, Kim WT, Hockemeyer D, Manz MG, Corn JE. Shin JJ, et al. Among authors: bray nl. Cell Rep. 2020 Sep 1;32(9):108093. doi: 10.1016/j.celrep.2020.108093. Cell Rep. 2020. PMID: 32877675 Free PMC article.
Expression reflects population structure.
Brown BC, Bray NL, Pachter L. Brown BC, et al. Among authors: bray nl. PLoS Genet. 2018 Dec 19;14(12):e1007841. doi: 10.1371/journal.pgen.1007841. eCollection 2018 Dec. PLoS Genet. 2018. PMID: 30566439 Free PMC article.
Author Correction: Discovery of stimulation-responsive immune enhancers with CRISPR activation.
Simeonov DR, Gowen BG, Boontanrart M, Roth TL, Gagnon JD, Mumbach MR, Satpathy AT, Lee Y, Bray NL, Chan AY, Lituiev DS, Nguyen ML, Gate RE, Subramaniam M, Li Z, Woo JM, Mitros T, Ray GJ, Curie GL, Naddaf N, Chu JS, Ma H, Boyer E, Van Gool F, Huang H, Liu R, Tobin VR, Schumann K, Daly MJ, Farh KK, Ansel KM, Ye CJ, Greenleaf WJ, Anderson MS, Bluestone JA, Chang HY, Corn JE, Marson A. Simeonov DR, et al. Among authors: bray nl. Nature. 2018 Jul;559(7715):E13. doi: 10.1038/s41586-018-0227-7. Nature. 2018. PMID: 29899441
Gene-level differential analysis at transcript-level resolution.
Yi L, Pimentel H, Bray NL, Pachter L. Yi L, et al. Among authors: bray nl. Genome Biol. 2018 Apr 12;19(1):53. doi: 10.1186/s13059-018-1419-z. Genome Biol. 2018. PMID: 29650040 Free PMC article.
Discovery of stimulation-responsive immune enhancers with CRISPR activation.
Simeonov DR, Gowen BG, Boontanrart M, Roth TL, Gagnon JD, Mumbach MR, Satpathy AT, Lee Y, Bray NL, Chan AY, Lituiev DS, Nguyen ML, Gate RE, Subramaniam M, Li Z, Woo JM, Mitros T, Ray GJ, Curie GL, Naddaf N, Chu JS, Ma H, Boyer E, Van Gool F, Huang H, Liu R, Tobin VR, Schumann K, Daly MJ, Farh KK, Ansel KM, Ye CJ, Greenleaf WJ, Anderson MS, Bluestone JA, Chang HY, Corn JE, Marson A. Simeonov DR, et al. Among authors: bray nl. Nature. 2017 Sep 7;549(7670):111-115. doi: 10.1038/nature23875. Epub 2017 Aug 30. Nature. 2017. PMID: 28854172 Free PMC article.
Disabling Cas9 by an anti-CRISPR DNA mimic.
Shin J, Jiang F, Liu JJ, Bray NL, Rauch BJ, Baik SH, Nogales E, Bondy-Denomy J, Corn JE, Doudna JA. Shin J, et al. Among authors: bray nl. Sci Adv. 2017 Jul 12;3(7):e1701620. doi: 10.1126/sciadv.1701620. eCollection 2017 Jul. Sci Adv. 2017. PMID: 28706995 Free PMC article.
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