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Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.).
Allen AM, Barker GL, Berry ST, Coghill JA, Gwilliam R, Kirby S, Robinson P, Brenchley RC, D'Amore R, McKenzie N, Waite D, Hall A, Bevan M, Hall N, Edwards KJ. Allen AM, et al. Among authors: Brenchley RC. Plant Biotechnol J. 2011 Dec;9(9):1086-99. doi: 10.1111/j.1467-7652.2011.00628.x. Epub 2011 Jun 1. Plant Biotechnol J. 2011. PMID: 21627760 Free article.
Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat.
Gardiner LJ, Bansept-Basler P, Olohan L, Joynson R, Brenchley R, Hall N, O'Sullivan DM, Hall A. Gardiner LJ, et al. Among authors: Brenchley R. Plant J. 2016 Aug;87(4):403-19. doi: 10.1111/tpj.13204. Epub 2016 Jul 18. Plant J. 2016. PMID: 27144898 Free PMC article.
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N. Brenchley R, et al. Nature. 2012 Nov 29;491(7426):705-10. doi: 10.1038/nature11650. Nature. 2012. PMID: 23192148 Free PMC article.
Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.
Thompson OA, Snoek LB, Nijveen H, Sterken MG, Volkers RJ, Brenchley R, Van't Hof A, Bevers RP, Cossins AR, Yanai I, Hajnal A, Schmid T, Perkins JD, Spencer D, Kruglyak L, Andersen EC, Moerman DG, Hillier LW, Kammenga JE, Waterston RH. Thompson OA, et al. Among authors: Brenchley R. Genetics. 2015 Jul;200(3):975-89. doi: 10.1534/genetics.115.175950. Epub 2015 May 19. Genetics. 2015. PMID: 25995208 Free PMC article.
Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans.
Snoek BL, Sterken MG, Bevers RPJ, Volkers RJM, Van't Hof A, Brenchley R, Riksen JAG, Cossins A, Kammenga JE. Snoek BL, et al. Among authors: Brenchley R. BMC Genomics. 2017 Jun 29;18(1):500. doi: 10.1186/s12864-017-3899-8. BMC Genomics. 2017. PMID: 28662696 Free PMC article.
The TriTryp phosphatome: analysis of the protein phosphatase catalytic domains.
Brenchley R, Tariq H, McElhinney H, Szöor B, Huxley-Jones J, Stevens R, Matthews K, Tabernero L. Brenchley R, et al. BMC Genomics. 2007 Nov 26;8:434. doi: 10.1186/1471-2164-8-434. BMC Genomics. 2007. PMID: 18039372 Free PMC article.
Targeted re-sequencing of the allohexaploid wheat exome.
Winfield MO, Wilkinson PA, Allen AM, Barker GL, Coghill JA, Burridge A, Hall A, Brenchley RC, D'Amore R, Hall N, Bevan MW, Richmond T, Gerhardt DJ, Jeddeloh JA, Edwards KJ. Winfield MO, et al. Among authors: Brenchley RC. Plant Biotechnol J. 2012 Aug;10(6):733-42. doi: 10.1111/j.1467-7652.2012.00713.x. Epub 2012 Jun 18. Plant Biotechnol J. 2012. PMID: 22703335 Free article.