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Year | Number of Results |
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Recent advances in user-friendly computational tools to engineer protein function.
Brief Bioinform. 2021 May 20;22(3):bbaa150. doi: 10.1093/bib/bbaa150.
Brief Bioinform. 2021.
PMID: 32743637
Free PMC article.
Review.
Dynamics, a Powerful Component of Current and Future in Silico Approaches for Protein Design and Engineering.
Surpeta B, Sequeiros-Borja CE, Brezovsky J.
Surpeta B, et al. Among authors: brezovsky j.
Int J Mol Sci. 2020 Apr 14;21(8):2713. doi: 10.3390/ijms21082713.
Int J Mol Sci. 2020.
PMID: 32295283
Free PMC article.
Review.
Item in Clipboard
Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations.
Sequeiros-Borja C, Surpeta B, Marchlewski I, Brezovsky J.
Sequeiros-Borja C, et al. Among authors: brezovsky j.
MethodsX. 2022 Dec 16;10:101968. doi: 10.1016/j.mex.2022.101968. eCollection 2023.
MethodsX. 2022.
PMID: 36582480
Free PMC article.
Item in Clipboard
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.
Jurcik A, Bednar D, Byska J, Marques SM, Furmanova K, Daniel L, Kokkonen P, Brezovsky J, Strnad O, Stourac J, Pavelka A, Manak M, Damborsky J, Kozlikova B.
Jurcik A, et al. Among authors: brezovsky j.
Bioinformatics. 2018 Oct 15;34(20):3586-3588. doi: 10.1093/bioinformatics/bty386.
Bioinformatics. 2018.
PMID: 29741570
Free PMC article.
Item in Clipboard
Water will Find Its Way: Transport through Narrow Tunnels in Hydrolases.
Sequeiros-Borja C, Surpeta B, Thirunavukarasu AS, Dongmo Foumthuim CJ, Marchlewski I, Brezovsky J.
Sequeiros-Borja C, et al. Among authors: brezovsky j.
J Chem Inf Model. 2024 Apr 26. doi: 10.1021/acs.jcim.4c00094. Online ahead of print.
J Chem Inf Model. 2024.
PMID: 38669675
Item in Clipboard
TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them.
Brezovsky J, Thirunavukarasu AS, Surpeta B, Sequeiros-Borja CE, Mandal N, Sarkar DK, Dongmo Foumthuim CJ, Agrawal N.
Brezovsky J, et al.
Bioinformatics. 2022 Mar 4;38(6):1752-1753. doi: 10.1093/bioinformatics/btab872.
Bioinformatics. 2022.
PMID: 34971366
Free PMC article.
Item in Clipboard
Restriction of access to the central cavity is a major contributor to substrate selectivity in plant ABCG transporters.
Pakuła K, Sequeiros-Borja C, Biała-Leonhard W, Pawela A, Banasiak J, Bailly A, Radom M, Geisler M, Brezovsky J, Jasiński M.
Pakuła K, et al. Among authors: brezovsky j.
Cell Mol Life Sci. 2023 Mar 23;80(4):105. doi: 10.1007/s00018-023-04751-6.
Cell Mol Life Sci. 2023.
PMID: 36952129
Free PMC article.
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