Brinkman F - Search Results

1

Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada.

Tyson S, Peterson CL, Olson A, Tyler S, Knox N, Griffiths E, Dooley D, Hsiao W, Cabral J, Johnson RP, Laing C, Gannon V, Lynch T, Van Domselaar G, Brinkman F, Graham M. Tyson S, et al. Among authors: brinkman f. Microbiol Resour Announc. 2019 Oct 10;8(41):e00625-19. doi: 10.1128/MRA.00625-19. Microbiol Resour Announc. 2019. PMID: 31601655 Free PMC article.

2

IslandPath: aiding detection of genomic islands in prokaryotes.

Hsiao W, Wan I, Jones SJ, Brinkman FS. Hsiao W, et al. Bioinformatics. 2003 Feb 12;19(3):418-20. doi: 10.1093/bioinformatics/btg004. Bioinformatics. 2003. PMID: 12584130

3

Genetic and molecular analysis of GogB, a phage-encoded type III-secreted substrate in Salmonella enterica serovar typhimurium with autonomous expression from its associated phage.

Coombes BK, Wickham ME, Brown NF, Lemire S, Bossi L, Hsiao WW, Brinkman FS, Finlay BB. Coombes BK, et al. Among authors: brinkman fs. J Mol Biol. 2005 May 13;348(4):817-30. doi: 10.1016/j.jmb.2005.03.024. J Mol Biol. 2005. PMID: 15843015

4

Evidence of a large novel gene pool associated with prokaryotic genomic islands.

Hsiao WW, Ung K, Aeschliman D, Bryan J, Finlay BB, Brinkman FS. Hsiao WW, et al. PLoS Genet. 2005 Nov;1(5):e62. doi: 10.1371/journal.pgen.0010062. Epub 2005 Nov 18. PLoS Genet. 2005. PMID: 16299586 Free PMC article.

5

Evaluation of genomic island predictors using a comparative genomics approach.

Langille MG, Hsiao WW, Brinkman FS. Langille MG, et al. BMC Bioinformatics. 2008 Aug 5;9:329. doi: 10.1186/1471-2105-9-329. BMC Bioinformatics. 2008. PMID: 18680607 Free PMC article.

6

The association of virulence factors with genomic islands.

Ho Sui SJ, Fedynak A, Hsiao WW, Langille MG, Brinkman FS. Ho Sui SJ, et al. PLoS One. 2009 Dec 1;4(12):e8094. doi: 10.1371/journal.pone.0008094. PLoS One. 2009. PMID: 19956607 Free PMC article.

7

Detecting genomic islands using bioinformatics approaches.

Langille MG, Hsiao WW, Brinkman FS. Langille MG, et al. Nat Rev Microbiol. 2010 May;8(5):373-82. doi: 10.1038/nrmicro2350. Nat Rev Microbiol. 2010. PMID: 20395967 Review.

8

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Langille MG, Laird MR, Hsiao WW, Chiu TA, Eisen JA, Brinkman FS. Langille MG, et al. Bioinformatics. 2012 Jul 15;28(14):1947-8. doi: 10.1093/bioinformatics/bts273. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576174 Free PMC article.

9

Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.

Winsor GL, Griffiths EJ, Lo R, Dhillon BK, Shay JA, Brinkman FS. Winsor GL, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D646-53. doi: 10.1093/nar/gkv1227. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578582 Free PMC article.

10

Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality.

Van Rossum T, Peabody MA, Uyaguari-Diaz MI, Cronin KI, Chan M, Slobodan JR, Nesbitt MJ, Suttle CA, Hsiao WW, Tang PK, Prystajecky NA, Brinkman FS. Van Rossum T, et al. Front Microbiol. 2015 Dec 16;6:1405. doi: 10.3389/fmicb.2015.01405. eCollection 2015. Front Microbiol. 2015. PMID: 26733955 Free PMC article.

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