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Protein feature based identification of cell cycle regulated proteins in yeast.
de Lichtenberg U, Jensen TS, Jensen LJ, Brunak S. de Lichtenberg U, et al. Among authors: brunak s. J Mol Biol. 2003 Jun 13;329(4):663-74. doi: 10.1016/s0022-2836(03)00490-x. J Mol Biol. 2003. PMID: 12787668
G+C-rich tract in 5' end of human introns.
Engelbrecht J, Knudsen S, Brunak S. Engelbrecht J, et al. Among authors: brunak s. J Mol Biol. 1992 Sep 5;227(1):108-13. doi: 10.1016/0022-2836(92)90685-d. J Mol Biol. 1992. PMID: 1522582
Prediction of human mRNA donor and acceptor sites from the DNA sequence.
Brunak S, Engelbrecht J, Knudsen S. Brunak S, et al. J Mol Biol. 1991 Jul 5;220(1):49-65. doi: 10.1016/0022-2836(91)90380-o. J Mol Biol. 1991. PMID: 2067018
Protein structures from distance inequalities.
Bohr J, Bohr H, Brunak S, Cotterill RM, Fredholm H, Lautrup B, Petersen SB. Bohr J, et al. Among authors: brunak s. J Mol Biol. 1993 Jun 5;231(3):861-9. doi: 10.1006/jmbi.1993.1332. J Mol Biol. 1993. PMID: 7685827
Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal.
Larsen NI, Engelbrecht J, Brunak S. Larsen NI, et al. Among authors: brunak s. Nucleic Acids Res. 1995 Apr 11;23(7):1223-30. doi: 10.1093/nar/23.7.1223. Nucleic Acids Res. 1995. PMID: 7739901 Free PMC article.
Neural network model of the genetic code is strongly correlated to the GES scale of amino acid transfer free energies.
Tolstrup N, Toftgård J, Engelbrecht J, Brunak S. Tolstrup N, et al. Among authors: brunak s. J Mol Biol. 1994 Nov 11;243(5):816-20. doi: 10.1006/jmbi.1994.1683. J Mol Biol. 1994. PMID: 7966302
Cleaning the GenBank Arabidopsis thaliana data set.
Korning PG, Hebsgaard SM, Rouze P, Brunak S. Korning PG, et al. Among authors: brunak s. Nucleic Acids Res. 1996 Jan 15;24(2):316-20. doi: 10.1093/nar/24.2.316. Nucleic Acids Res. 1996. PMID: 8628656 Free PMC article.
Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.
Hebsgaard SM, Korning PG, Tolstrup N, Engelbrecht J, Rouzé P, Brunak S. Hebsgaard SM, et al. Among authors: brunak s. Nucleic Acids Res. 1996 Sep 1;24(17):3439-52. doi: 10.1093/nar/24.17.3439. Nucleic Acids Res. 1996. PMID: 8811101 Free PMC article.
Characterization of prokaryotic and eukaryotic promoters using hidden Markov models.
Pedersen AG, Baldi P, Brunak S, Chauvin Y. Pedersen AG, et al. Among authors: brunak s. Proc Int Conf Intell Syst Mol Biol. 1996;4:182-91. Proc Int Conf Intell Syst Mol Biol. 1996. PMID: 8877518
Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networks.
Blom N, Hansen J, Blaas D, Brunak S. Blom N, et al. Among authors: brunak s. Protein Sci. 1996 Nov;5(11):2203-16. doi: 10.1002/pro.5560051107. Protein Sci. 1996. PMID: 8931139 Free PMC article.
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