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Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence.
Blom N, Sicheritz-Pontén T, Gupta R, Gammeltoft S, Brunak S. Blom N, et al. Among authors: brunak s. Proteomics. 2004 Jun;4(6):1633-49. doi: 10.1002/pmic.200300771. Proteomics. 2004. PMID: 15174133 Review.
G+C-rich tract in 5' end of human introns.
Engelbrecht J, Knudsen S, Brunak S. Engelbrecht J, et al. Among authors: brunak s. J Mol Biol. 1992 Sep 5;227(1):108-13. doi: 10.1016/0022-2836(92)90685-d. J Mol Biol. 1992. PMID: 1522582
Prediction of human mRNA donor and acceptor sites from the DNA sequence.
Brunak S, Engelbrecht J, Knudsen S. Brunak S, et al. J Mol Biol. 1991 Jul 5;220(1):49-65. doi: 10.1016/0022-2836(91)90380-o. J Mol Biol. 1991. PMID: 2067018
Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal.
Larsen NI, Engelbrecht J, Brunak S. Larsen NI, et al. Among authors: brunak s. Nucleic Acids Res. 1995 Apr 11;23(7):1223-30. doi: 10.1093/nar/23.7.1223. Nucleic Acids Res. 1995. PMID: 7739901 Free PMC article.
Neural network model of the genetic code is strongly correlated to the GES scale of amino acid transfer free energies.
Tolstrup N, Toftgård J, Engelbrecht J, Brunak S. Tolstrup N, et al. Among authors: brunak s. J Mol Biol. 1994 Nov 11;243(5):816-20. doi: 10.1006/jmbi.1994.1683. J Mol Biol. 1994. PMID: 7966302
O-GLYCBASE: a revised database of O-glycosylated proteins.
Hansen JE, Lund O, Nielsen JO, Hansen JE, Brunak S. Hansen JE, et al. Among authors: brunak s. Nucleic Acids Res. 1996 Jan 1;24(1):248-52. doi: 10.1093/nar/24.1.248. Nucleic Acids Res. 1996. PMID: 8594592 Free PMC article.
Cleaning the GenBank Arabidopsis thaliana data set.
Korning PG, Hebsgaard SM, Rouze P, Brunak S. Korning PG, et al. Among authors: brunak s. Nucleic Acids Res. 1996 Jan 15;24(2):316-20. doi: 10.1093/nar/24.2.316. Nucleic Acids Res. 1996. PMID: 8628656 Free PMC article.
Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.
Hebsgaard SM, Korning PG, Tolstrup N, Engelbrecht J, Rouzé P, Brunak S. Hebsgaard SM, et al. Among authors: brunak s. Nucleic Acids Res. 1996 Sep 1;24(17):3439-52. doi: 10.1093/nar/24.17.3439. Nucleic Acids Res. 1996. PMID: 8811101 Free PMC article.
Defining a similarity threshold for a functional protein sequence pattern: the signal peptide cleavage site.
Nielsen H, Engelbrecht J, von Heijne G, Brunak S. Nielsen H, et al. Among authors: brunak s. Proteins. 1996 Feb;24(2):165-77. doi: 10.1002/(SICI)1097-0134(199602)24:2<165::AID-PROT4>3.0.CO;2-I. Proteins. 1996. PMID: 8820484
Distance distributions in proteins: a six-parameter representation.
Reese MG, Lund O, Bohr J, Bohr H, Hansen JE, Brunak S. Reese MG, et al. Among authors: brunak s. Protein Eng. 1996 Sep;9(9):733-40. doi: 10.1093/protein/9.9.733. Protein Eng. 1996. PMID: 8888138
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