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Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S. Bendtsen JD, et al. J Mol Biol. 2004 Jul 16;340(4):783-95. doi: 10.1016/j.jmb.2004.05.028. J Mol Biol. 2004. PMID: 15223320
G+C-rich tract in 5' end of human introns.
Engelbrecht J, Knudsen S, Brunak S. Engelbrecht J, et al. J Mol Biol. 1992 Sep 5;227(1):108-13. doi: 10.1016/0022-2836(92)90685-d. J Mol Biol. 1992. PMID: 1522582
Prediction of human mRNA donor and acceptor sites from the DNA sequence.
Brunak S, Engelbrecht J, Knudsen S. Brunak S, et al. J Mol Biol. 1991 Jul 5;220(1):49-65. doi: 10.1016/0022-2836(91)90380-o. J Mol Biol. 1991. PMID: 2067018
Protein secondary structure and homology by neural networks. The alpha-helices in rhodopsin.
Bohr H, Bohr J, Brunak S, Cotterill RM, Lautrup B, Nørskov L, Olsen OH, Petersen SB. Bohr H, et al. FEBS Lett. 1988 Dec 5;241(1-2):223-8. doi: 10.1016/0014-5793(88)81066-4. FEBS Lett. 1988. PMID: 3197832
Protein structures from distance inequalities.
Bohr J, Bohr H, Brunak S, Cotterill RM, Fredholm H, Lautrup B, Petersen SB. Bohr J, et al. J Mol Biol. 1993 Jun 5;231(3):861-9. doi: 10.1006/jmbi.1993.1332. J Mol Biol. 1993. PMID: 7685827
Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal.
Larsen NI, Engelbrecht J, Brunak S. Larsen NI, et al. Nucleic Acids Res. 1995 Apr 11;23(7):1223-30. doi: 10.1093/nar/23.7.1223. Nucleic Acids Res. 1995. PMID: 7739901 Free PMC article.
O-GLYCBASE: a revised database of O-glycosylated proteins.
Hansen JE, Lund O, Nielsen JO, Hansen JE, Brunak S. Hansen JE, et al. Nucleic Acids Res. 1996 Jan 1;24(1):248-52. doi: 10.1093/nar/24.1.248. Nucleic Acids Res. 1996. PMID: 8594592 Free PMC article.
Cleaning the GenBank Arabidopsis thaliana data set.
Korning PG, Hebsgaard SM, Rouze P, Brunak S. Korning PG, et al. Nucleic Acids Res. 1996 Jan 15;24(2):316-20. doi: 10.1093/nar/24.2.316. Nucleic Acids Res. 1996. PMID: 8628656 Free PMC article.
Prediction of the secondary structure of HIV-1 gp120.
Hansen JE, Lund O, Nielsen JO, Brunak S, Hansen JE. Hansen JE, et al. Proteins. 1996 May;25(1):1-11. doi: 10.1002/(SICI)1097-0134(199605)25:1<1::AID-PROT1>3.0.CO;2-N. Proteins. 1996. PMID: 8727315
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