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Non-classical protein secretion in bacteria.
Bendtsen JD, Kiemer L, Fausbøll A, Brunak S. Bendtsen JD, et al. Among authors: brunak s. BMC Microbiol. 2005 Oct 7;5:58. doi: 10.1186/1471-2180-5-58. BMC Microbiol. 2005. PMID: 16212653 Free PMC article.
Protein secondary structure and homology by neural networks. The alpha-helices in rhodopsin.
Bohr H, Bohr J, Brunak S, Cotterill RM, Lautrup B, Nørskov L, Olsen OH, Petersen SB. Bohr H, et al. Among authors: brunak s. FEBS Lett. 1988 Dec 5;241(1-2):223-8. doi: 10.1016/0014-5793(88)81066-4. FEBS Lett. 1988. PMID: 3197832
Defining a similarity threshold for a functional protein sequence pattern: the signal peptide cleavage site.
Nielsen H, Engelbrecht J, von Heijne G, Brunak S. Nielsen H, et al. Among authors: brunak s. Proteins. 1996 Feb;24(2):165-77. doi: 10.1002/(SICI)1097-0134(199602)24:2<165::AID-PROT4>3.0.CO;2-I. Proteins. 1996. PMID: 8820484
Characterization of prokaryotic and eukaryotic promoters using hidden Markov models.
Pedersen AG, Baldi P, Brunak S, Chauvin Y. Pedersen AG, et al. Among authors: brunak s. Proc Int Conf Intell Syst Mol Biol. 1996;4:182-91. Proc Int Conf Intell Syst Mol Biol. 1996. PMID: 8877518
Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networks.
Blom N, Hansen J, Blaas D, Brunak S. Blom N, et al. Among authors: brunak s. Protein Sci. 1996 Nov;5(11):2203-16. doi: 10.1002/pro.5560051107. Protein Sci. 1996. PMID: 8931139 Free PMC article.
Relationship between protein structure and geometrical constraints.
Lund O, Hansen J, Brunak S, Bohr J. Lund O, et al. Among authors: brunak s. Protein Sci. 1996 Nov;5(11):2217-25. doi: 10.1002/pro.5560051108. Protein Sci. 1996. PMID: 8931140 Free PMC article.
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Nielsen H, et al. Among authors: brunak s. Protein Eng. 1997 Jan;10(1):1-6. doi: 10.1093/protein/10.1.1. Protein Eng. 1997. PMID: 9051728
A branch point consensus from Arabidopsis found by non-circular analysis allows for better prediction of acceptor sites.
Tolstrup N, Rouzé P, Brunak S. Tolstrup N, et al. Among authors: brunak s. Nucleic Acids Res. 1997 Aug 1;25(15):3159-63. doi: 10.1093/nar/25.15.3159. Nucleic Acids Res. 1997. PMID: 9224618 Free PMC article.
Protein distance constraints predicted by neural networks and probability density functions.
Lund O, Frimand K, Gorodkin J, Bohr H, Bohr J, Hansen J, Brunak S. Lund O, et al. Among authors: brunak s. Protein Eng. 1997 Nov;10(11):1241-8. doi: 10.1093/protein/10.11.1241. Protein Eng. 1997. PMID: 9514112
NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility.
Hansen JE, Lund O, Tolstrup N, Gooley AA, Williams KL, Brunak S. Hansen JE, et al. Among authors: brunak s. Glycoconj J. 1998 Feb;15(2):115-30. doi: 10.1023/a:1006960004440. Glycoconj J. 1998. PMID: 9557871
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