Bruno WJ - Search Results

1

Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction.

Bruno WJ, Socci ND, Halpern AL. Bruno WJ, et al. Mol Biol Evol. 2000 Jan;17(1):189-97. doi: 10.1093/oxfordjournals.molbev.a026231. Mol Biol Evol. 2000. PMID: 10666718

2

On imposing detailed balance in complex reaction mechanisms.

Yang J, Bruno WJ, Hlavacek WS, Pearson JE. Yang J, et al. Among authors: bruno wj. Biophys J. 2006 Aug 1;91(3):1136-41. doi: 10.1529/biophysj.105.071852. Epub 2006 May 12. Biophys J. 2006. PMID: 16698778 Free PMC article. No abstract available.

3

Classification of hepatitis C virus and human immunodeficiency virus-1 sequences with the branching index.

Hraber P, Kuiken C, Waugh M, Geer S, Bruno WJ, Leitner T. Hraber P, et al. Among authors: bruno wj. J Gen Virol. 2008 Sep;89(Pt 9):2098-2107. doi: 10.1099/vir.0.83657-0. J Gen Virol. 2008. PMID: 18753218 Free PMC article.

4

Transformations that preserve detailed balance in Markov models.

Bruno WJ, Pearson JE. Bruno WJ, et al. J Comput Biol. 2006 Nov;13(9):1574-8. doi: 10.1089/cmb.2006.13.1574. J Comput Biol. 2006. PMID: 17147480

5

Simplification of reversible Markov chains by removal of states with low equilibrium occupancy.

Ullah G, Bruno WJ, Pearson JE. Ullah G, et al. Among authors: bruno wj. J Theor Biol. 2012 Oct 21;311:117-29. doi: 10.1016/j.jtbi.2012.07.007. Epub 2012 Jul 20. J Theor Biol. 2012. PMID: 22820127 Free PMC article.

6

Automated maximum likelihood separation of signal from baseline in noisy quantal data.

Bruno WJ, Ullah G, Mak DO, Pearson JE. Bruno WJ, et al. Biophys J. 2013 Jul 2;105(1):68-79. doi: 10.1016/j.bpj.2013.02.060. Biophys J. 2013. PMID: 23823225 Free PMC article.

7

The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data.

Maljkovic Berry I, Athreya G, Kothari M, Daniels M, Bruno WJ, Korber B, Kuiken C, Ribeiro RM, Leitner T. Maljkovic Berry I, et al. Among authors: bruno wj. Epidemics. 2009 Dec;1(4):230-9. doi: 10.1016/j.epidem.2009.10.003. Epub 2009 Nov 12. Epidemics. 2009. PMID: 21352769 Free PMC article.

8

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

Dutilh BE, Huynen MA, Bruno WJ, Snel B. Dutilh BE, et al. Among authors: bruno wj. J Mol Evol. 2004 May;58(5):527-39. doi: 10.1007/s00239-003-2575-6. J Mol Evol. 2004. PMID: 15170256

9

Evolutionary HMMs: a Bayesian approach to multiple alignment.

Holmes I, Bruno WJ. Holmes I, et al. Among authors: bruno wj. Bioinformatics. 2001 Sep;17(9):803-20. doi: 10.1093/bioinformatics/17.9.803. Bioinformatics. 2001. PMID: 11590097

10

Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition.

Pollock DD, Bruno WJ. Pollock DD, et al. Among authors: bruno wj. Mol Biol Evol. 2000 Dec;17(12):1854-8. doi: 10.1093/oxfordjournals.molbev.a026286. Mol Biol Evol. 2000. PMID: 11110901

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