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1,038 results
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Hadamard phylogenetic methods and the n-taxon process.
Bryant D. Bryant D. Bull Math Biol. 2009 Feb;71(2):339-51. doi: 10.1007/s11538-008-9364-8. Epub 2008 Oct 10. Bull Math Biol. 2009. PMID: 18846403
Consistency of the neighbor-net algorithm.
Bryant D, Moulton V, Spillner A. Bryant D, et al. Algorithms Mol Biol. 2007 Jun 28;2:8. doi: 10.1186/1748-7188-2-8. Algorithms Mol Biol. 2007. PMID: 17597551 Free PMC article.
Computing the distribution of a tree metric.
Bryant D, Steel M. Bryant D, et al. IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):420-6. doi: 10.1109/TCBB.2009.32. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19644170
Efficient Recycled Algorithms for Quantitative Trait Models on Phylogenies.
Hiscott G, Fox C, Parry M, Bryant D. Hiscott G, et al. Genome Biol Evol. 2016 May 12;8(5):1338-50. doi: 10.1093/gbe/evw064. Genome Biol Evol. 2016. PMID: 27056412 Free PMC article.
The link between segregation and phylogenetic diversity.
Bryant D, Klaere S. Bryant D, et al. J Math Biol. 2012 Jan;64(1-2):149-62. doi: 10.1007/s00285-011-0409-5. Epub 2011 Feb 19. J Math Biol. 2012. PMID: 21336622
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.
Bryant D, Bouckaert R, Felsenstein J, Rosenberg NA, RoyChoudhury A. Bryant D, et al. Mol Biol Evol. 2012 Aug;29(8):1917-32. doi: 10.1093/molbev/mss086. Epub 2012 Mar 14. Mol Biol Evol. 2012. PMID: 22422763 Free PMC article.
Failure to Recover Major Events of Gene Flux in Real Biological Data Due to Method Misapplication.
Kapust N, Nelson-Sathi S, Schönfeld B, Hazkani-Covo E, Bryant D, Lockhart PJ, Röttger M, Xavier JC, Martin WF. Kapust N, et al. Genome Biol Evol. 2018 Apr 1;10(5):1198-1209. doi: 10.1093/gbe/evy080. Genome Biol Evol. 2018. PMID: 29718211 Free PMC article.
A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.
Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, Gelius-Dietrich G, Henze K, Kretschmann E, Richly E, Leister D, Bryant D, Steel MA, Lockhart PJ, Penny D, Martin W. Esser C, et al. Mol Biol Evol. 2004 Sep;21(9):1643-60. doi: 10.1093/molbev/msh160. Epub 2004 May 21. Mol Biol Evol. 2004. PMID: 15155797
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