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1,048 results
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Application of phylogenetic networks in evolutionary studies.
Huson DH, Bryant D. Huson DH, et al. Among authors: bryant d. Mol Biol Evol. 2006 Feb;23(2):254-67. doi: 10.1093/molbev/msj030. Epub 2005 Oct 12. Mol Biol Evol. 2006. PMID: 16221896
Hadamard phylogenetic methods and the n-taxon process.
Bryant D. Bryant D. Bull Math Biol. 2009 Feb;71(2):339-51. doi: 10.1007/s11538-008-9364-8. Epub 2008 Oct 10. Bull Math Biol. 2009. PMID: 18846403
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.
Bryant D, Bouckaert R, Felsenstein J, Rosenberg NA, RoyChoudhury A. Bryant D, et al. Mol Biol Evol. 2012 Aug;29(8):1917-32. doi: 10.1093/molbev/mss086. Epub 2012 Mar 14. Mol Biol Evol. 2012. PMID: 22422763 Free PMC article.
Properties of consensus methods for inferring species trees from gene trees.
Degnan JH, DeGiorgio M, Bryant D, Rosenberg NA. Degnan JH, et al. Among authors: bryant d. Syst Biol. 2009 Feb;58(1):35-54. doi: 10.1093/sysbio/syp008. Epub 2009 Jun 4. Syst Biol. 2009. PMID: 20525567 Free PMC article.
Failure to Recover Major Events of Gene Flux in Real Biological Data Due to Method Misapplication.
Kapust N, Nelson-Sathi S, Schönfeld B, Hazkani-Covo E, Bryant D, Lockhart PJ, Röttger M, Xavier JC, Martin WF. Kapust N, et al. Among authors: bryant d. Genome Biol Evol. 2018 Apr 1;10(5):1198-1209. doi: 10.1093/gbe/evy080. Genome Biol Evol. 2018. PMID: 29718211 Free PMC article.
Genome networks root the tree of life between prokaryotic domains.
Dagan T, Roettger M, Bryant D, Martin W. Dagan T, et al. Among authors: bryant d. Genome Biol Evol. 2010 Jul 12;2:379-92. doi: 10.1093/gbe/evq025. Genome Biol Evol. 2010. PMID: 20624742 Free PMC article.
A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.
Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, Gelius-Dietrich G, Henze K, Kretschmann E, Richly E, Leister D, Bryant D, Steel MA, Lockhart PJ, Penny D, Martin W. Esser C, et al. Among authors: bryant d. Mol Biol Evol. 2004 Sep;21(9):1643-60. doi: 10.1093/molbev/msh160. Epub 2004 May 21. Mol Biol Evol. 2004. PMID: 15155797
Calculating the evolutionary rates of different genes: a fast, accurate estimator with applications to maximum likelihood phylogenetic analysis.
Bevan RB, Lang BF, Bryant D. Bevan RB, et al. Among authors: bryant d. Syst Biol. 2005 Dec;54(6):900-15. doi: 10.1080/10635150500354829. Syst Biol. 2005. PMID: 16282169
Accounting for gene rate heterogeneity in phylogenetic inference.
Bevan RB, Bryant D, Lang BF. Bevan RB, et al. Among authors: bryant d. Syst Biol. 2007 Apr;56(2):194-205. doi: 10.1080/10635150701291804. Syst Biol. 2007. PMID: 17464878
A general comparison of relaxed molecular clock models.
Lepage T, Bryant D, Philippe H, Lartillot N. Lepage T, et al. Among authors: bryant d. Mol Biol Evol. 2007 Dec;24(12):2669-80. doi: 10.1093/molbev/msm193. Epub 2007 Sep 21. Mol Biol Evol. 2007. PMID: 17890241
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