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State of the art: refinement of multiple sequence alignments.
Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH. Chakrabarti S, et al. Among authors: bryant sh. BMC Bioinformatics. 2006 Nov 14;7:499. doi: 10.1186/1471-2105-7-499. BMC Bioinformatics. 2006. PMID: 17105653 Free PMC article.
CDD: a curated Entrez database of conserved domain alignments.
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH. Marchler-Bauer A, et al. Among authors: bryant sh. Nucleic Acids Res. 2003 Jan 1;31(1):383-7. doi: 10.1093/nar/gkg087. Nucleic Acids Res. 2003. PMID: 12520028 Free PMC article.
A structure-based method for protein sequence alignment.
Kann MG, Thiessen PA, Panchenko AR, Schäffer AA, Altschul SF, Bryant SH. Kann MG, et al. Among authors: bryant sh. Bioinformatics. 2005 Apr 15;21(8):1451-6. doi: 10.1093/bioinformatics/bti233. Epub 2004 Dec 21. Bioinformatics. 2005. PMID: 15613392
Refining multiple sequence alignments with conserved core regions.
Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH. Chakrabarti S, et al. Among authors: bryant sh. Nucleic Acids Res. 2006 May 17;34(9):2598-606. doi: 10.1093/nar/gkl274. Print 2006. Nucleic Acids Res. 2006. PMID: 16707662 Free PMC article.
225 results