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Quantifying Homologous Proteins and Proteoforms.
Malioutov D, Chen T, Airoldi E, Jaffe J, Budnik B, Slavov N. Malioutov D, et al. Among authors: Budnik B. Mol Cell Proteomics. 2019 Jan;18(1):162-168. doi: 10.1074/mcp.TIR118.000947. Epub 2018 Oct 3. Mol Cell Proteomics. 2019. PMID: 30282776 Free PMC article.
Differential Stoichiometry among Core Ribosomal Proteins.
Slavov N, Semrau S, Airoldi E, Budnik B, van Oudenaarden A. Slavov N, et al. Among authors: Budnik B. Cell Rep. 2015 Nov 3;13(5):865-73. doi: 10.1016/j.celrep.2015.09.056. Epub 2015 Oct 22. Cell Rep. 2015. PMID: 26565899 Free PMC article.
A human microprotein that interacts with the mRNA decapping complex.
D'Lima NG, Ma J, Winkler L, Chu Q, Loh KH, Corpuz EO, Budnik BA, Lykke-Andersen J, Saghatelian A, Slavoff SA. D'Lima NG, et al. Among authors: Budnik BA. Nat Chem Biol. 2017 Feb;13(2):174-180. doi: 10.1038/nchembio.2249. Epub 2016 Dec 5. Nat Chem Biol. 2017. PMID: 27918561 Free PMC article.
Peptidomic discovery of short open reading frame-encoded peptides in human cells.
Slavoff SA, Mitchell AJ, Schwaid AG, Cabili MN, Ma J, Levin JZ, Karger AD, Budnik BA, Rinn JL, Saghatelian A. Slavoff SA, et al. Among authors: Budnik BA. Nat Chem Biol. 2013 Jan;9(1):59-64. doi: 10.1038/nchembio.1120. Epub 2012 Nov 18. Nat Chem Biol. 2013. PMID: 23160002 Free PMC article.
Global methods for protein glycosylation analysis by mass spectrometry.
Budnik BA, Lee RS, Steen JA. Budnik BA, et al. Biochim Biophys Acta. 2006 Dec;1764(12):1870-80. doi: 10.1016/j.bbapap.2006.10.005. Epub 2006 Oct 18. Biochim Biophys Acta. 2006. PMID: 17118724 Review.
Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast.
Geiler-Samerotte KA, Dion MF, Budnik BA, Wang SM, Hartl DL, Drummond DA. Geiler-Samerotte KA, et al. Among authors: Budnik BA. Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):680-5. doi: 10.1073/pnas.1017570108. Epub 2010 Dec 27. Proc Natl Acad Sci U S A. 2011. PMID: 21187411 Free PMC article.
Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue.
Ma J, Ward CC, Jungreis I, Slavoff SA, Schwaid AG, Neveu J, Budnik BA, Kellis M, Saghatelian A. Ma J, et al. Among authors: Budnik BA. J Proteome Res. 2014 Mar 7;13(3):1757-65. doi: 10.1021/pr401280w. Epub 2014 Feb 14. J Proteome Res. 2014. PMID: 24490786 Free PMC article.
Molecular physiology of chemical defenses in a poison frog.
Caty SN, Alvarez-Buylla A, Byrd GD, Vidoudez C, Roland AB, Tapia EE, Budnik B, Trauger SA, Coloma LA, O'Connell LA. Caty SN, et al. Among authors: Budnik B. J Exp Biol. 2019 Jun 20;222(Pt 12):jeb204149. doi: 10.1242/jeb.204149. J Exp Biol. 2019. PMID: 31138640 Free article.
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