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Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data.
Breden F, Luning Prak ET, Peters B, Rubelt F, Schramm CA, Busse CE, Vander Heiden JA, Christley S, Bukhari SAC, Thorogood A, Matsen Iv FA, Wine Y, Laserson U, Klatzmann D, Douek DC, Lefranc MP, Collins AM, Bubela T, Kleinstein SH, Watson CT, Cowell LG, Scott JK, Kepler TB. Breden F, et al. Among authors: bukhari sac. Front Immunol. 2017 Nov 1;8:1418. doi: 10.3389/fimmu.2017.01418. eCollection 2017. Front Immunol. 2017. PMID: 29163494 Free PMC article.
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data.
Rubelt F, Busse CE, Bukhari SAC, Bürckert JP, Mariotti-Ferrandiz E, Cowell LG, Watson CT, Marthandan N, Faison WJ, Hershberg U, Laserson U, Corrie BD, Davis MM, Peters B, Lefranc MP, Scott JK, Breden F; AIRR Community; Luning Prak ET, Kleinstein SH. Rubelt F, et al. Among authors: bukhari sac. Nat Immunol. 2017 Nov 16;18(12):1274-1278. doi: 10.1038/ni.3873. Nat Immunol. 2017. PMID: 29144493 Free PMC article.
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH. Bukhari SAC, et al. Front Immunol. 2018 Aug 16;9:1877. doi: 10.3389/fimmu.2018.01877. eCollection 2018. Front Immunol. 2018. PMID: 30166985 Free PMC article.
AIRR Community Standardized Representations for Annotated Immune Repertoires.
Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community; Christley S, Laserson U. Vander Heiden JA, et al. Among authors: bukhari sac. Front Immunol. 2018 Sep 28;9:2206. doi: 10.3389/fimmu.2018.02206. eCollection 2018. Front Immunol. 2018. PMID: 30323809 Free PMC article.
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons.
Christley S, Aguiar A, Blanck G, Breden F, Bukhari SAC, Busse CE, Jaglale J, Harikrishnan SL, Laserson U, Peters B, Rocha A, Schramm CA, Taylor S, Vander Heiden JA, Zimonja B, Watson CT, Corrie B, Cowell LG. Christley S, et al. Among authors: bukhari sac. Front Big Data. 2020 Jun 17;3:22. doi: 10.3389/fdata.2020.00022. eCollection 2020. Front Big Data. 2020. PMID: 33693395 Free PMC article.
The Future of Blood Testing Is the Immunome.
Arnaout RA, Prak ETL, Schwab N, Rubelt F; Adaptive Immune Receptor Repertoire Community. Arnaout RA, et al. Front Immunol. 2021 Mar 15;12:626793. doi: 10.3389/fimmu.2021.626793. eCollection 2021. Front Immunol. 2021. PMID: 33790897 Free PMC article.
A linked data graph approach to integration of immunological data.
Bukhari SAC, Mandell J, Kleinstein SH, Cheung KH. Bukhari SAC, et al. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2019 Nov;2019:1742-1749. doi: 10.1109/bibm47256.2019.8982986. Epub 2020 Feb 6. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2019. PMID: 34707915 Free PMC article.
30 results