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116 results
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Discovering DNA regulatory elements with bacteria.
Bulyk ML. Bulyk ML. Nat Biotechnol. 2005 Aug;23(8):942-4. doi: 10.1038/nbt0805-942. Nat Biotechnol. 2005. PMID: 16082362 Free PMC article. No abstract available.
Quantifying DNA-protein interactions by double-stranded DNA arrays.
Bulyk ML, Gentalen E, Lockhart DJ, Church GM. Bulyk ML, et al. Nat Biotechnol. 1999 Jun;17(6):573-7. doi: 10.1038/9878. Nat Biotechnol. 1999. PMID: 10385322
Jury remains out on simple models of transcription factor specificity.
Morris Q, Bulyk ML, Hughes TR. Morris Q, et al. Among authors: bulyk ml. Nat Biotechnol. 2011 Jun 7;29(6):483-4. doi: 10.1038/nbt.1892. Nat Biotechnol. 2011. PMID: 21654663 Free PMC article. No abstract available.
Evaluation of methods for modeling transcription factor sequence specificity.
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR. Weirauch MT, et al. Among authors: bulyk ml. Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27. Nat Biotechnol. 2013. PMID: 23354101 Free PMC article.
DNA microarray technologies for measuring protein-DNA interactions.
Bulyk ML. Bulyk ML. Curr Opin Biotechnol. 2006 Aug;17(4):422-30. doi: 10.1016/j.copbio.2006.06.015. Epub 2006 Jul 12. Curr Opin Biotechnol. 2006. PMID: 16839757 Free PMC article. Review.
Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.
Berger MF, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Protoc. 2009;4(3):393-411. doi: 10.1038/nprot.2008.195. Nat Protoc. 2009. PMID: 19265799 Free PMC article.
Protein binding microarrays for the characterization of DNA-protein interactions.
Bulyk ML. Bulyk ML. Adv Biochem Eng Biotechnol. 2007;104:65-85. doi: 10.1007/10_025. Adv Biochem Eng Biotechnol. 2007. PMID: 17290819 Free PMC article. Review.
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.
Systematic identification of mammalian regulatory motifs' target genes and functions.
Warner JB, Philippakis AA, Jaeger SA, He FS, Lin J, Bulyk ML. Warner JB, et al. Among authors: bulyk ml. Nat Methods. 2008 Apr;5(4):347-53. doi: 10.1038/nmeth.1188. Epub 2008 Mar 2. Nat Methods. 2008. PMID: 18311145 Free PMC article.
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.
Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML. Mukherjee S, et al. Among authors: bulyk ml. Nat Genet. 2004 Dec;36(12):1331-9. doi: 10.1038/ng1473. Epub 2004 Nov 14. Nat Genet. 2004. PMID: 15543148 Free PMC article.
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