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116 results
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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Berger MF, et al. Among authors: bulyk ml. Nat Biotechnol. 2006 Nov;24(11):1429-35. doi: 10.1038/nbt1246. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998473 Free PMC article.
Quantifying DNA-protein interactions by double-stranded DNA arrays.
Bulyk ML, Gentalen E, Lockhart DJ, Church GM. Bulyk ML, et al. Nat Biotechnol. 1999 Jun;17(6):573-7. doi: 10.1038/9878. Nat Biotechnol. 1999. PMID: 10385322
Computational comparison of two draft sequences of the human genome.
Aach J, Bulyk ML, Church GM, Comander J, Derti A, Shendure J. Aach J, et al. Among authors: bulyk ml. Nature. 2001 Feb 15;409(6822):856-9. doi: 10.1038/35057055. Nature. 2001. PMID: 11237010
Exploring the DNA-binding specificities of zinc fingers with DNA microarrays.
Bulyk ML, Huang X, Choo Y, Church GM. Bulyk ML, et al. Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7158-63. doi: 10.1073/pnas.111163698. Epub 2001 Jun 12. Proc Natl Acad Sci U S A. 2001. PMID: 11404456 Free PMC article.
Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors.
Bulyk ML, Johnson PL, Church GM. Bulyk ML, et al. Nucleic Acids Res. 2002 Mar 1;30(5):1255-61. doi: 10.1093/nar/30.5.1255. Nucleic Acids Res. 2002. PMID: 11861919 Free PMC article.
Additivity in protein-DNA interactions: how good an approximation is it?
Benos PV, Bulyk ML, Stormo GD. Benos PV, et al. Among authors: bulyk ml. Nucleic Acids Res. 2002 Oct 15;30(20):4442-51. doi: 10.1093/nar/gkf578. Nucleic Acids Res. 2002. PMID: 12384591 Free PMC article.
A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays.
Lee ML, Bulyk ML, Whitmore GA, Church GM. Lee ML, et al. Among authors: bulyk ml. Biometrics. 2002 Dec;58(4):981-8. doi: 10.1111/j.0006-341x.2002.00981.x. Biometrics. 2002. PMID: 12495153
Computational prediction of transcription-factor binding site locations.
Bulyk ML. Bulyk ML. Genome Biol. 2003;5(1):201. doi: 10.1186/gb-2003-5-1-201. Epub 2003 Dec 23. Genome Biol. 2003. PMID: 14709165 Free PMC article. Review.
A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
Bulyk ML, McGuire AM, Masuda N, Church GM. Bulyk ML, et al. Genome Res. 2004 Feb;14(2):201-8. doi: 10.1101/gr.1448004. Genome Res. 2004. PMID: 14762058 Free PMC article.
Integrative functional genomics.
Bulyk ML. Bulyk ML. Genome Biol. 2004;5(7):331. doi: 10.1186/gb-2004-5-7-331. Epub 2004 Jun 24. Genome Biol. 2004. PMID: 15239826 Free PMC article.
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