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Impact of host cell variation on the neutralization of HIV-1 in vitro.
Polonis VR, Schuitemaker H, Bunnik EM, Brown BK, Scarlatti G. Polonis VR, et al. Among authors: bunnik em. Curr Opin HIV AIDS. 2009 Sep;4(5):400-7. doi: 10.1097/COH.0b013e32832edc50. Curr Opin HIV AIDS. 2009. PMID: 20048704 Review.
Adaptation of HIV-1 envelope gp120 to humoral immunity at a population level.
Bunnik EM, Euler Z, Welkers MR, Boeser-Nunnink BD, Grijsen ML, Prins JM, Schuitemaker H. Bunnik EM, et al. Nat Med. 2010 Sep;16(9):995-7. doi: 10.1038/nm.2203. Epub 2010 Aug 29. Nat Med. 2010. PMID: 20802498
Activity of broadly neutralizing antibodies, including PG9, PG16, and VRC01, against recently transmitted subtype B HIV-1 variants from early and late in the epidemic.
Euler Z, Bunnik EM, Burger JA, Boeser-Nunnink BD, Grijsen ML, Prins JM, Schuitemaker H. Euler Z, et al. Among authors: bunnik em. J Virol. 2011 Jul;85(14):7236-45. doi: 10.1128/JVI.00196-11. Epub 2011 May 11. J Virol. 2011. PMID: 21561918 Free PMC article.
Longer V1V2 region with increased number of potential N-linked glycosylation sites in the HIV-1 envelope glycoprotein protects against HIV-specific neutralizing antibodies.
van Gils MJ, Bunnik EM, Boeser-Nunnink BD, Burger JA, Terlouw-Klein M, Verwer N, Schuitemaker H. van Gils MJ, et al. Among authors: bunnik em. J Virol. 2011 Jul;85(14):6986-95. doi: 10.1128/JVI.00268-11. Epub 2011 May 18. J Virol. 2011. PMID: 21593147 Free PMC article.
Emergence of monoclonal antibody b12-resistant human immunodeficiency virus type 1 variants during natural infection in the absence of humoral or cellular immune pressure.
Bunnik EM, van Gils MJ, Lobbrecht MS, Pisas L, Nanlohy NM, van Baarle D, van Nuenen AC, Hessell AJ, Schuitemaker H. Bunnik EM, et al. J Gen Virol. 2010 May;91(Pt 5):1354-64. doi: 10.1099/vir.0.017319-0. Epub 2010 Jan 6. J Gen Virol. 2010. PMID: 20053822
Polymorphism in HIV-1 dependency factor PDE8A affects mRNA level and HIV-1 replication in primary macrophages.
Bol SM, Booiman T, Bunnik EM, Moerland PD, van Dort K, Strauss JF 3rd, Sieberer M, Schuitemaker H, Kootstra NA, van 't Wout AB. Bol SM, et al. Among authors: bunnik em. Virology. 2011 Nov 10;420(1):32-42. doi: 10.1016/j.virol.2011.08.013. Epub 2011 Sep 13. Virology. 2011. PMID: 21920574
Immunization with recombinant HLA classes I and II, HIV-1 gp140, and SIV p27 elicits protection against heterologous SHIV infection in rhesus macaques.
Mörner A, Jansson M, Bunnik EM, Schøller J, Vaughan R, Wang Y, Montefiori DC, Otting N, Bontrop R, Bergmeier LA, Singh M, Wyatt RT, Schuitemaker H, Biberfeld G, Thorstensson R, Lehner T. Mörner A, et al. Among authors: bunnik em. J Virol. 2011 Jul;85(13):6442-52. doi: 10.1128/JVI.00129-11. Epub 2011 Apr 13. J Virol. 2011. PMID: 21490092 Free PMC article.
Single nucleotide polymorphism in gene encoding transcription factor Prep1 is associated with HIV-1-associated dementia.
Bol SM, Booiman T, van Manen D, Bunnik EM, van Sighem AI, Sieberer M, Boeser-Nunnink B, de Wolf F, Schuitemaker H, Portegies P, Kootstra NA, van 't Wout AB. Bol SM, et al. Among authors: bunnik em. PLoS One. 2012;7(2):e30990. doi: 10.1371/journal.pone.0030990. Epub 2012 Feb 7. PLoS One. 2012. PMID: 22347417 Free PMC article.
Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing.
Bunnik EM, Swenson LC, Edo-Matas D, Huang W, Dong W, Frantzell A, Petropoulos CJ, Coakley E, Schuitemaker H, Harrigan PR, van 't Wout AB. Bunnik EM, et al. PLoS Pathog. 2011 Jun;7(6):e1002106. doi: 10.1371/journal.ppat.1002106. Epub 2011 Jun 23. PLoS Pathog. 2011. PMID: 21731496 Free PMC article.
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