Byrne KP - Search Results

1

Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome.

Gordon JL, Byrne KP, Wolfe KH. Gordon JL, et al. Among authors: byrne kp. PLoS Genet. 2009 May;5(5):e1000485. doi: 10.1371/journal.pgen.1000485. Epub 2009 May 15. PLoS Genet. 2009. PMID: 19436716 Free PMC article.

2

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species.

Byrne KP, Wolfe KH. Byrne KP, et al. Genome Res. 2005 Oct;15(10):1456-61. doi: 10.1101/gr.3672305. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169922 Free PMC article.

3

Rate asymmetry after genome duplication causes substantial long-branch attraction artifacts in the phylogeny of Saccharomyces species.

Fares MA, Byrne KP, Wolfe KH. Fares MA, et al. Among authors: byrne kp. Mol Biol Evol. 2006 Feb;23(2):245-53. doi: 10.1093/molbev/msj027. Epub 2005 Oct 5. Mol Biol Evol. 2006. PMID: 16207937

4

Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser.

Byrne KP, Wolfe KH. Byrne KP, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D452-5. doi: 10.1093/nar/gkj041. Nucleic Acids Res. 2006. PMID: 16381909 Free PMC article.

5

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts.

Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH. Scannell DR, et al. Among authors: byrne kp. Nature. 2006 Mar 16;440(7082):341-5. doi: 10.1038/nature04562. Nature. 2006. PMID: 16541074

6

Consistent patterns of rate asymmetry and gene loss indicate widespread neofunctionalization of yeast genes after whole-genome duplication.

Byrne KP, Wolfe KH. Byrne KP, et al. Genetics. 2007 Mar;175(3):1341-50. doi: 10.1534/genetics.106.066951. Epub 2006 Dec 28. Genetics. 2007. PMID: 17194778 Free PMC article.

7

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication.

Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH. Scannell DR, et al. Among authors: byrne kp. Proc Natl Acad Sci U S A. 2007 May 15;104(20):8397-402. doi: 10.1073/pnas.0608218104. Epub 2007 May 9. Proc Natl Acad Sci U S A. 2007. PMID: 17494770 Free PMC article.

8

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments.

OhÉigeartaigh SS, Armisén D, Byrne KP, Wolfe KH. OhÉigeartaigh SS, et al. Among authors: byrne kp. BMC Genomics. 2011 Jul 26;12:377. doi: 10.1186/1471-2164-12-377. BMC Genomics. 2011. PMID: 21791067 Free PMC article.

9

Mechanisms of chromosome number evolution in yeast.

Gordon JL, Byrne KP, Wolfe KH. Gordon JL, et al. Among authors: byrne kp. PLoS Genet. 2011 Jul;7(7):e1002190. doi: 10.1371/journal.pgen.1002190. Epub 2011 Jul 21. PLoS Genet. 2011. PMID: 21811419 Free PMC article.

10

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents.

Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH. Gordon JL, et al. Among authors: byrne kp. Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20024-9. doi: 10.1073/pnas.1112808108. Epub 2011 Nov 28. Proc Natl Acad Sci U S A. 2011. PMID: 22123960 Free PMC article.

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