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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2007 4
2008 8
2009 1
2010 6
2011 2
2012 3
2013 1
2021 0
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21 results
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Page 1
A global protein kinase and phosphatase interaction network in yeast.
Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M. Breitkreutz A, et al. Science. 2010 May 21;328(5981):1043-6. doi: 10.1126/science.1176495. Science. 2010. PMID: 20489023 Free PMC article.
Combining results of multiple search engines in proteomics.
Shteynberg D, Nesvizhskii AI, Moritz RL, Deutsch EW. Shteynberg D, et al. Mol Cell Proteomics. 2013 Sep;12(9):2383-93. doi: 10.1074/mcp.R113.027797. Epub 2013 May 29. Mol Cell Proteomics. 2013. PMID: 23720762 Free PMC article. Review.
Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.
Nesvizhskii AI. Nesvizhskii AI. Proteomics. 2012 May;12(10):1639-55. doi: 10.1002/pmic.201100537. Proteomics. 2012. PMID: 22611043 Free PMC article. Review.
Metabolites of purine nucleoside phosphorylase (NP) in serum have the potential to delineate pancreatic adenocarcinoma.
Vareed SK, Bhat VB, Thompson C, Vasu VT, Fermin D, Choi H, Creighton CJ, Gayatri S, Lan L, Putluri N, Thangjam GS, Kaur P, Shabahang M, Giri JG, Nesvizhskii AI, Asea AA, Cashikar AG, Rao A, McLoughlin J, Sreekumar A. Vareed SK, et al. PLoS One. 2011 Mar 23;6(3):e17177. doi: 10.1371/journal.pone.0017177. PLoS One. 2011. PMID: 21448452 Free PMC article.
ProHits: integrated software for mass spectrometry-based interaction proteomics.
Liu G, Zhang J, Larsen B, Stark C, Breitkreutz A, Lin ZY, Breitkreutz BJ, Ding Y, Colwill K, Pasculescu A, Pawson T, Wrana JL, Nesvizhskii AI, Raught B, Tyers M, Gingras AC. Liu G, et al. Nat Biotechnol. 2010 Oct;28(10):1015-7. doi: 10.1038/nbt1010-1015. Nat Biotechnol. 2010. PMID: 20944583 Free PMC article. No abstract available.
A statistical model-building perspective to identification of MS/MS spectra with PeptideProphet.
Ma K, Vitek O, Nesvizhskii AI. Ma K, et al. BMC Bioinformatics. 2012;13 Suppl 16(Suppl 16):S1. doi: 10.1186/1471-2105-13-S16-S1. Epub 2012 Nov 5. BMC Bioinformatics. 2012. PMID: 23176103 Free PMC article.
Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets.
Ning K, Fermin D, Nesvizhskii AI. Ning K, et al. Proteomics. 2010 Jul;10(14):2712-8. doi: 10.1002/pmic.200900473. Proteomics. 2010. PMID: 20455209 Free PMC article.
Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis.
Fermin D, Basrur V, Yocum AK, Nesvizhskii AI. Fermin D, et al. Proteomics. 2011 Apr;11(7):1340-5. doi: 10.1002/pmic.201000650. Epub 2011 Feb 17. Proteomics. 2011. PMID: 21360675 Free PMC article.
Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data.
Choi H, Kim S, Gingras AC, Nesvizhskii AI. Choi H, et al. Mol Syst Biol. 2010 Jun 22;6:385. doi: 10.1038/msb.2010.41. Mol Syst Biol. 2010. PMID: 20571534 Free PMC article.
Significance analysis of spectral count data in label-free shotgun proteomics.
Choi H, Fermin D, Nesvizhskii AI. Choi H, et al. Mol Cell Proteomics. 2008 Dec;7(12):2373-85. doi: 10.1074/mcp.M800203-MCP200. Epub 2008 Jul 20. Mol Cell Proteomics. 2008. PMID: 18644780 Free PMC article.
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