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151 results
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Global patterns of protein domain gain and loss in superkingdoms.
Nasir A, Kim KM, Caetano-Anollés G. Nasir A, et al. PLoS Comput Biol. 2014 Jan 30;10(1):e1003452. doi: 10.1371/journal.pcbi.1003452. eCollection 2014 Jan. PLoS Comput Biol. 2014. PMID: 24499935 Free PMC article.
Universal sharing patterns in proteomes and evolution of protein fold architecture and life.
Caetano-Anollés G, Caetano-Anollés D. Caetano-Anollés G, et al. J Mol Evol. 2005 Apr;60(4):484-98. doi: 10.1007/s00239-004-0221-6. J Mol Evol. 2005. PMID: 15883883
Grass evolution inferred from chromosomal rearrangements and geometrical and statistical features in RNA structure.
Caetano-Anollés G. Caetano-Anollés G. J Mol Evol. 2005 May;60(5):635-52. doi: 10.1007/s00239-004-0244-z. J Mol Evol. 2005. PMID: 15983872
Global phylogeny determined by the combination of protein domains in proteomes.
Wang M, Caetano-Anollés G. Wang M, et al. Mol Biol Evol. 2006 Dec;23(12):2444-54. doi: 10.1093/molbev/msl117. Epub 2006 Sep 13. Mol Biol Evol. 2006. PMID: 16971695
The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture.
Caetano-Anollés G, Kim HS, Mittenthal JE. Caetano-Anollés G, et al. Proc Natl Acad Sci U S A. 2007 May 29;104(22):9358-63. doi: 10.1073/pnas.0701214104. Epub 2007 May 21. Proc Natl Acad Sci U S A. 2007. PMID: 17517598 Free PMC article.
Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event?
Martin N, Ruedi EA, Leduc R, Sun FJ, Caetano-Anollés G. Martin N, et al. Biol Direct. 2007 Sep 25;2:23. doi: 10.1186/1745-6150-2-23. Biol Direct. 2007. PMID: 17894859 Free PMC article.
Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world.
Wang M, Yafremava LS, Caetano-Anollés D, Mittenthal JE, Caetano-Anollés G. Wang M, et al. Genome Res. 2007 Nov;17(11):1572-85. doi: 10.1101/gr.6454307. Epub 2007 Oct 1. Genome Res. 2007. PMID: 17908824 Free PMC article.
The origin and evolution of tRNA inferred from phylogenetic analysis of structure.
Sun FJ, Caetano-Anollés G. Sun FJ, et al. J Mol Evol. 2008 Jan;66(1):21-35. doi: 10.1007/s00239-007-9050-8. Epub 2007 Dec 4. J Mol Evol. 2008. PMID: 18058157
Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses.
Sun FJ, Caetano-Anollés G. Sun FJ, et al. PLoS Comput Biol. 2008 Mar 7;4(3):e1000018. doi: 10.1371/journal.pcbi.1000018. PLoS Comput Biol. 2008. PMID: 18369418 Free PMC article.
Origins and evolution of modern biochemistry: insights from genomes and molecular structure.
Caetano-Anolles G, Sun FJ, Wang M, Yafremava LS, Harish A, Kim HS, Knudsen V, Caetano-Anolles D, Mittenthal JE. Caetano-Anolles G, et al. Front Biosci. 2008 May 1;13:5212-40. doi: 10.2741/3077. Front Biosci. 2008. PMID: 18508583 Review.
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