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Unraveling RNA dynamical behavior of TPP riboswitches: a comparison between Escherichia coli and Arabidopsis thaliana.

Antunes D, Jorge NAN, Garcia de Souza Costa M, Passetti F, Caffarena ER. Antunes D, et al. Among authors: caffarena er. Sci Rep. 2019 Mar 12;9(1):4197. doi: 10.1038/s41598-019-40875-1. Sci Rep. 2019. PMID: 30862893 Free PMC article.

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Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools.

Antunes D, Jorge NAN, Caffarena ER, Passetti F. Antunes D, et al. Among authors: caffarena er. Front Genet. 2018 Jan 19;8:231. doi: 10.3389/fgene.2017.00231. eCollection 2017. Front Genet. 2018. PMID: 29403526 Free PMC article. Review.

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The rare lncRNA GOLLD is widespread and structurally conserved among Mycobacterium tRNA arrays.

Morgado S, Antunes D, Caffarena E, Vicente AC. Morgado S, et al. RNA Biol. 2020 Jul;17(7):1001-1008. doi: 10.1080/15476286.2020.1748922. Epub 2020 Apr 22. RNA Biol. 2020. PMID: 32275844 Free PMC article.

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Shared Binding Mode of Perrottetinene and Tetrahydrocannabinol Diastereomers inside the CB1 Receptor May Incentivize Novel Medicinal Drug Design: Findings from an in Silico Assay.

Reis MH, Antunes D, Santos LHS, Guimarães ACR, Caffarena ER. Reis MH, et al. Among authors: caffarena er. ACS Chem Neurosci. 2020 Dec 16;11(24):4289-4300. doi: 10.1021/acschemneuro.0c00547. Epub 2020 Nov 17. ACS Chem Neurosci. 2020. PMID: 33201672

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Mycobacterium tuberculosis and M. bovis BCG Moreau Fumarate Reductase Operons Produce Different Polypeptides That May Be Related to Non-canonical Functions.

Schwarz MGA, Antunes D, Corrêa PR, da Silva-Gonçalves AJ, Malaga W, Caffarena ER, Guilhot C, Mendonça-Lima L. Schwarz MGA, et al. Among authors: caffarena er. Front Microbiol. 2021 Jan 12;11:624121. doi: 10.3389/fmicb.2020.624121. eCollection 2020. Front Microbiol. 2021. PMID: 33510737 Free PMC article.

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Structural and dynamic insights into the C-terminal extension of cysteine proteinase B from Leishmania amazonensis.

Santos DA, de Souza Costa MG, Alves CR, Caffarena ER. Santos DA, et al. Among authors: caffarena er. J Mol Graph Model. 2016 Nov;70:30-39. doi: 10.1016/j.jmgm.2016.08.007. Epub 2016 Sep 5. J Mol Graph Model. 2016. PMID: 27649549

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In silico analysis of the V66M variant of human BDNF in psychiatric disorders: An approach to precision medicine.

De Oliveira CCS, Pereira GRC, De Alcantara JYS, Antunes D, Caffarena ER, De Mesquita JF. De Oliveira CCS, et al. Among authors: caffarena er. PLoS One. 2019 Apr 18;14(4):e0215508. doi: 10.1371/journal.pone.0215508. eCollection 2019. PLoS One. 2019. PMID: 30998730 Free PMC article.

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The role of hydrophobicity in the cold denaturation of proteins under high pressure: A study on apomyoglobin.

Espinosa YR, Caffarena ER, Grigera JR. Espinosa YR, et al. Among authors: caffarena er. J Chem Phys. 2019 Feb 21;150(7):075102. doi: 10.1063/1.5080942. J Chem Phys. 2019. PMID: 30795674

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In silico predicted epitopes from the COOH-terminal extension of cysteine proteinase B inducing distinct immune responses during Leishmania (Leishmania) amazonensis experimental murine infection.

Pereira BA, Silva FS, Rebello KM, Marín-Villa M, Traub-Cseko YM, Andrade TC, Bertho ÁL, Caffarena ER, Alves CR. Pereira BA, et al. Among authors: caffarena er. BMC Immunol. 2011 Aug 8;12:44. doi: 10.1186/1471-2172-12-44. BMC Immunol. 2011. PMID: 21824434 Free PMC article.

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Structure-based functional inference of hypothetical proteins from Mycoplasma hyopneumoniae.

da Fonsêca MM, Zaha A, Caffarena ER, Vasconcelos AT. da Fonsêca MM, et al. Among authors: caffarena er. J Mol Model. 2012 May;18(5):1917-25. doi: 10.1007/s00894-011-1212-3. Epub 2011 Aug 26. J Mol Model. 2012. PMID: 21870198 Free PMC article.

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