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Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox.
Cairelli MJ, Miller CM, Fiszman M, Workman TE, Rindflesch TC. Cairelli MJ, et al. AMIA Annu Symp Proc. 2013 Nov 16;2013:164-73. eCollection 2013. AMIA Annu Symp Proc. 2013. PMID: 24551329 Free PMC article.
Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury.
Cairelli MJ, Fiszman M, Zhang H, Rindflesch TC. Cairelli MJ, et al. J Biomed Semantics. 2015 May 18;6:25. doi: 10.1186/s13326-015-0022-4. eCollection 2015. J Biomed Semantics. 2015. PMID: 25992264 Free PMC article.
Spark, an application based on Serendipitous Knowledge Discovery.
Workman TE, Fiszman M, Cairelli MJ, Nahl D, Rindflesch TC. Workman TE, et al. Among authors: cairelli mj. J Biomed Inform. 2016 Apr;60:23-37. doi: 10.1016/j.jbi.2015.12.014. Epub 2015 Dec 28. J Biomed Inform. 2016. PMID: 26732995 Free article.
Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing.
Rindflesch TC, Blake CL, Cairelli MJ, Fiszman M, Zeiss CJ, Kilicoglu H. Rindflesch TC, et al. Among authors: cairelli mj. J Biomed Semantics. 2018 Dec 27;9(1):25. doi: 10.1186/s13326-018-0192-y. J Biomed Semantics. 2018. PMID: 30587224 Free PMC article.
Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplements.
Zhang R, Adam TJ, Simon G, Cairelli MJ, Rindflesch T, Pakhomov S, Melton GB. Zhang R, et al. Among authors: cairelli mj. AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:69-73. eCollection 2015. AMIA Jt Summits Transl Sci Proc. 2015. PMID: 26306241 Free PMC article.
Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs.
Zhang R, Cairelli MJ, Fiszman M, Kilicoglu H, Rindflesch TC, Pakhomov SV, Melton GB. Zhang R, et al. Among authors: cairelli mj. Cancer Inform. 2014 Oct 14;13(Suppl 1):103-11. doi: 10.4137/CIN.S13889. eCollection 2014. Cancer Inform. 2014. PMID: 25392688 Free PMC article.
Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference.
Chen G, Cairelli MJ, Kilicoglu H, Shin D, Rindflesch TC. Chen G, et al. Among authors: cairelli mj. PLoS Comput Biol. 2014 Jun 12;10(6):e1003666. doi: 10.1371/journal.pcbi.1003666. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24921649 Free PMC article.
Using semantic predications to uncover drug-drug interactions in clinical data.
Zhang R, Cairelli MJ, Fiszman M, Rosemblat G, Kilicoglu H, Rindflesch TC, Pakhomov SV, Melton GB. Zhang R, et al. Among authors: cairelli mj. J Biomed Inform. 2014 Jun;49:134-47. doi: 10.1016/j.jbi.2014.01.004. Epub 2014 Jan 19. J Biomed Inform. 2014. PMID: 24448204 Free PMC article.
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