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Identification and analysis of evolutionarily cohesive functional modules in protein networks.
Campillos M, von Mering C, Jensen LJ, Bork P. Campillos M, et al. Genome Res. 2006 Mar;16(3):374-82. doi: 10.1101/gr.4336406. Epub 2006 Jan 31. Genome Res. 2006. PMID: 16449501 Free PMC article.
Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.
Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P. Iskar M, et al. Among authors: campillos m. Mol Syst Biol. 2013;9:662. doi: 10.1038/msb.2013.20. Mol Syst Biol. 2013. PMID: 23632384 Free PMC article.
Large-scale prediction of drug-target relationships.
Kuhn M, Campillos M, González P, Jensen LJ, Bork P. Kuhn M, et al. Among authors: campillos m. FEBS Lett. 2008 Apr 9;582(8):1283-90. doi: 10.1016/j.febslet.2008.02.024. Epub 2008 Feb 20. FEBS Lett. 2008. PMID: 18291108 Review.
Computational characterization of multiple Gag-like human proteins.
Campillos M, Doerks T, Shah PK, Bork P. Campillos M, et al. Trends Genet. 2006 Nov;22(11):585-9. doi: 10.1016/j.tig.2006.09.006. Epub 2006 Sep 18. Trends Genet. 2006. PMID: 16979784
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.
Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P. Zdobnov EM, et al. Among authors: campillos m. Nucleic Acids Res. 2005 Feb 16;33(3):946-54. doi: 10.1093/nar/gki236. Print 2005. Nucleic Acids Res. 2005. PMID: 15716312 Free PMC article.
Drug target identification using side-effect similarity.
Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P. Campillos M, et al. Science. 2008 Jul 11;321(5886):263-6. doi: 10.1126/science.1158140. Science. 2008. PMID: 18621671
STITCH: interaction networks of chemicals and proteins.
Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P. Kuhn M, et al. Among authors: campillos m. Nucleic Acids Res. 2008 Jan;36(Database issue):D684-8. doi: 10.1093/nar/gkm795. Epub 2007 Dec 15. Nucleic Acids Res. 2008. PMID: 18084021 Free PMC article.
Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs.
Vogt I, Prinz J, Campillos M. Vogt I, et al. Among authors: campillos m. Genome Med. 2014 Aug 17;6(7):52. doi: 10.1186/s13073-014-0052-z. eCollection 2014. Genome Med. 2014. PMID: 25276232 Free PMC article.
Drug-induced regulation of target expression.
Iskar M, Campillos M, Kuhn M, Jensen LJ, van Noort V, Bork P. Iskar M, et al. Among authors: campillos m. PLoS Comput Biol. 2010 Sep 9;6(9):e1000925. doi: 10.1371/journal.pcbi.1000925. PLoS Comput Biol. 2010. PMID: 20838579 Free PMC article.
SIREs: searching for iron-responsive elements.
Campillos M, Cases I, Hentze MW, Sanchez M. Campillos M, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W360-7. doi: 10.1093/nar/gkq371. Epub 2010 May 11. Nucleic Acids Res. 2010. PMID: 20460462 Free PMC article.
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