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Systematic reconstruction of cellular trajectories across mouse embryogenesis.
Qiu C, Cao J, Martin BK, Li T, Welsh IC, Srivatsan S, Huang X, Calderon D, Noble WS, Disteche CM, Murray SA, Spielmann M, Moens CB, Trapnell C, Shendure J. Qiu C, et al. Among authors: cao j. Nat Genet. 2022 Mar;54(3):328-341. doi: 10.1038/s41588-022-01018-x. Epub 2022 Mar 14. Nat Genet. 2022. PMID: 35288709 Free PMC article.
The single-cell transcriptional landscape of mammalian organogenesis.
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L, Steemers FJ, Trapnell C, Shendure J. Cao J, et al. Nature. 2019 Feb;566(7745):496-502. doi: 10.1038/s41586-019-0969-x. Epub 2019 Feb 20. Nature. 2019. PMID: 30787437 Free PMC article.
Massively multiplex chemical transcriptomics at single-cell resolution.
Srivatsan SR, McFaline-Figueroa JL, Ramani V, Saunders L, Cao J, Packer J, Pliner HA, Jackson DL, Daza RM, Christiansen L, Zhang F, Steemers F, Shendure J, Trapnell C. Srivatsan SR, et al. Among authors: cao j. Science. 2020 Jan 3;367(6473):45-51. doi: 10.1126/science.aax6234. Epub 2019 Dec 5. Science. 2020. PMID: 31806696 Free PMC article.
A human cell atlas of fetal chromatin accessibility.
Domcke S, Hill AJ, Daza RM, Cao J, O'Day DR, Pliner HA, Aldinger KA, Pokholok D, Zhang F, Milbank JH, Zager MA, Glass IA, Steemers FJ, Doherty D, Trapnell C, Cusanovich DA, Shendure J. Domcke S, et al. Among authors: cao j. Science. 2020 Nov 13;370(6518):eaba7612. doi: 10.1126/science.aba7612. Science. 2020. PMID: 33184180 Free PMC article.
A human cell atlas of fetal gene expression.
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R, Zhang F, Spielmann M, Palis J, Doherty D, Steemers FJ, Glass IA, Trapnell C, Shendure J. Cao J, et al. Science. 2020 Nov 13;370(6518):eaba7721. doi: 10.1126/science.aba7721. Science. 2020. PMID: 33184181 Free PMC article.
Oncogenic role of a developmentally regulated NTRK2 splice variant.
Pattwell SS, Arora S, Nuechterlein N, Zager M, Loeb KR, Cimino PJ, Holland NC, Reche-Ley N, Bolouri H, Almiron Bonnin DA, Szulzewsky F, Phadnis VV, Ozawa T, Wagner MJ, Haffner MC, Cao J, Shendure J, Holland EC. Pattwell SS, et al. Among authors: cao j. Sci Adv. 2022 Oct 7;8(40):eabo6789. doi: 10.1126/sciadv.abo6789. Epub 2022 Oct 7. Sci Adv. 2022. PMID: 36206341 Free PMC article.
Optimized single-nucleus transcriptional profiling by combinatorial indexing.
Martin BK, Qiu C, Nichols E, Phung M, Green-Gladden R, Srivatsan S, Blecher-Gonen R, Beliveau BJ, Trapnell C, Cao J, Shendure J. Martin BK, et al. Among authors: cao j. Nat Protoc. 2023 Jan;18(1):188-207. doi: 10.1038/s41596-022-00752-0. Epub 2022 Oct 19. Nat Protoc. 2023. PMID: 36261634 Free PMC article. Review.
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