Caporaso JG - Search Results

1

Individual diet has sex-dependent effects on vertebrate gut microbiota.

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R. Bolnick DI, et al. Among authors: caporaso jg. Nat Commun. 2014 Jul 29;5:4500. doi: 10.1038/ncomms5500. Nat Commun. 2014. PMID: 25072318 Free PMC article.

2

Origins of the genetic code: the escaped triplet theory.

Yarus M, Caporaso JG, Knight R. Yarus M, et al. Among authors: caporaso jg. Annu Rev Biochem. 2005;74:179-98. doi: 10.1146/annurev.biochem.74.082803.133119. Annu Rev Biochem. 2005. PMID: 15952885 Review.

3

Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

Caporaso JG, Yarus M, Knight R. Caporaso JG, et al. J Mol Evol. 2005 Nov;61(5):597-607. doi: 10.1007/s00239-004-0314-2. Epub 2005 Oct 6. J Mol Evol. 2005. PMID: 16211428

4

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.

Caporaso JG, Smit S, Easton BC, Hunter L, Huttley GA, Knight R. Caporaso JG, et al. BMC Evol Biol. 2008 Dec 3;8:327. doi: 10.1186/1471-2148-8-327. BMC Evol Biol. 2008. PMID: 19055758 Free PMC article.

5

PyNAST: a flexible tool for aligning sequences to a template alignment.

Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. Caporaso JG, et al. Bioinformatics. 2010 Jan 15;26(2):266-7. doi: 10.1093/bioinformatics/btp636. Epub 2009 Nov 13. Bioinformatics. 2010. PMID: 19914921 Free PMC article.

6

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.

7

Soil bacterial and fungal communities across a pH gradient in an arable soil.

Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N. Rousk J, et al. Among authors: caporaso jg. ISME J. 2010 Oct;4(10):1340-51. doi: 10.1038/ismej.2010.58. Epub 2010 May 6. ISME J. 2010. PMID: 20445636 Free article.

8

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Caporaso JG, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4516-22. doi: 10.1073/pnas.1000080107. Epub 2010 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 20534432 Free PMC article.

9

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes.

Chu H, Fierer N, Lauber CL, Caporaso JG, Knight R, Grogan P. Chu H, et al. Among authors: caporaso jg. Environ Microbiol. 2010 Nov;12(11):2998-3006. doi: 10.1111/j.1462-2920.2010.02277.x. Environ Microbiol. 2010. PMID: 20561020

10

Examining the global distribution of dominant archaeal populations in soil.

Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R, Fierer N. Bates ST, et al. Among authors: caporaso jg. ISME J. 2011 May;5(5):908-17. doi: 10.1038/ismej.2010.171. Epub 2010 Nov 18. ISME J. 2011. PMID: 21085198 Free PMC article.

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