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Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus.
Carbone I, Jakobek JL, Ramirez-Prado JH, Horn BW. Carbone I, et al. Mol Ecol. 2007 Oct;16(20):4401-17. doi: 10.1111/j.1365-294X.2007.03464.x. Mol Ecol. 2007. PMID: 17725568
A microbial population-species interface: nested cladistic and coalescent inference with multilocus data.
Carbone I, Kohn LM. Carbone I, et al. Mol Ecol. 2001 Apr;10(4):947-64. doi: 10.1046/j.1365-294x.2001.01244.x. Mol Ecol. 2001. PMID: 11348503
Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation.
Carbone I, Kohn LM. Carbone I, et al. Mol Ecol. 2001 Oct;10(10):2409-22. doi: 10.1046/j.0962-1083.2001.01380.x. Mol Ecol. 2001. PMID: 11742545
Evidence for divergence includes (i) lack of shared fingerprints between the two locations, (ii) evolution of new fingerprints, via transposition and recombination, within 2 years on a fine spatial scale within one sampling location, and (iii) increase in the size of the i …
Evidence for divergence includes (i) lack of shared fingerprints between the two locations, (ii) evolution of new fingerprints, via t …
Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent.
Carbone I, Liu YC, Hillman BI, Milgroom MG. Carbone I, et al. Genetics. 2004 Apr;166(4):1611-29. doi: 10.1534/genetics.166.4.1611. Genetics. 2004. PMID: 15126384 Free PMC article.
SNAP: workbench management tool for evolutionary population genetic analysis.
Price EW, Carbone I. Price EW, et al. Among authors: carbone i. Bioinformatics. 2005 Feb 1;21(3):402-4. doi: 10.1093/bioinformatics/bti003. Epub 2004 Sep 7. Bioinformatics. 2005. PMID: 15353448
Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci.
Charles L, Carbone I, Davies KG, Bird D, Burke M, Kerry BR, Opperman CH. Charles L, et al. Among authors: carbone i. J Bacteriol. 2005 Aug;187(16):5700-8. doi: 10.1128/JB.187.16.5700-5708.2005. J Bacteriol. 2005. PMID: 16077116 Free PMC article.
SNAP: Combine and Map modules for multilocus population genetic analysis.
Aylor DL, Price EW, Carbone I. Aylor DL, et al. Among authors: carbone i. Bioinformatics. 2006 Jun 1;22(11):1399-401. doi: 10.1093/bioinformatics/btl136. Epub 2006 Apr 6. Bioinformatics. 2006. PMID: 16601003
The evolutionary history of cytochrome P450 genes in four filamentous Ascomycetes.
Deng J, Carbone I, Dean RA. Deng J, et al. Among authors: carbone i. BMC Evol Biol. 2007 Feb 26;7:30. doi: 10.1186/1471-2148-7-30. BMC Evol Biol. 2007. PMID: 17324274 Free PMC article.
An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies.
Gómez-Alpizar L, Carbone I, Ristaino JB. Gómez-Alpizar L, et al. Among authors: carbone i. Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3306-11. doi: 10.1073/pnas.0611479104. Epub 2007 Feb 21. Proc Natl Acad Sci U S A. 2007. PMID: 17360643 Free PMC article.
Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster.
Carbone I, Ramirez-Prado JH, Jakobek JL, Horn BW. Carbone I, et al. BMC Evol Biol. 2007 Jul 9;7:111. doi: 10.1186/1471-2148-7-111. BMC Evol Biol. 2007. PMID: 17620135 Free PMC article.
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