Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

390 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of im …
Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software eng …
The complete connectome of a learning and memory centre in an insect brain.
Eichler K, Li F, Litwin-Kumar A, Park Y, Andrade I, Schneider-Mizell CM, Saumweber T, Huser A, Eschbach C, Gerber B, Fetter RD, Truman JW, Priebe CE, Abbott LF, Thum AS, Zlatic M, Cardona A. Eichler K, et al. Nature. 2017 Aug 9;548(7666):175-182. doi: 10.1038/nature23455. Nature. 2017. PMID: 28796202 Free PMC article.
Associating stimuli with positive or negative reinforcement is essential for survival, but a complete wiring diagram of a higher-order circuit supporting associative memory has not been previously available. ...This organization maximizes performance of a mod …
Associating stimuli with positive or negative reinforcement is essential for survival, but a complete wiring diagram of a high …
Multicut brings automated neurite segmentation closer to human performance.
Beier T, Pape C, Rahaman N, Prange T, Berg S, Bock DD, Cardona A, Knott GW, Plaza SM, Scheffer LK, Koethe U, Kreshuk A, Hamprecht FA. Beier T, et al. Nat Methods. 2017 Jan 31;14(2):101-102. doi: 10.1038/nmeth.4151. Nat Methods. 2017. PMID: 28139671 No abstract available.
Functional architecture of reward learning in mushroom body extrinsic neurons of larval Drosophila.
Saumweber T, Rohwedder A, Schleyer M, Eichler K, Chen YC, Aso Y, Cardona A, Eschbach C, Kobler O, Voigt A, Durairaja A, Mancini N, Zlatic M, Truman JW, Thum AS, Gerber B. Saumweber T, et al. Nat Commun. 2018 Mar 16;9(1):1104. doi: 10.1038/s41467-018-03130-1. Nat Commun. 2018. PMID: 29549237 Free PMC article.
The insect mushroom body exemplifies how a central brain structure brings about such integration. Here we use a combination of systematic single-cell labeling, connectomics, transgenic silencing, and activation experiments to study the mushroom body at single-cell r …
The insect mushroom body exemplifies how a central brain structure brings about such integration. Here we use a combination of …
A high-level 3D visualization API for Java and ImageJ.
Schmid B, Schindelin J, Cardona A, Longair M, Heisenberg M. Schmid B, et al. BMC Bioinformatics. 2010 May 21;11:274. doi: 10.1186/1471-2105-11-274. BMC Bioinformatics. 2010. PMID: 20492697 Free PMC article.
RESULTS: Here we present a platform-independent framework based on Java and Java 3D for accelerated rendering of biological images. Our framework is seamlessly integrated into ImageJ, a free image processing package with a vast collection of community-develop …
RESULTS: Here we present a platform-independent framework based on Java and Java 3D for accelerated rendering of biological images. O …
Elastic volume reconstruction from series of ultra-thin microscopy sections.
Saalfeld S, Fetter R, Cardona A, Tomancak P. Saalfeld S, et al. Nat Methods. 2012 Jun 10;9(7):717-20. doi: 10.1038/nmeth.2072. Nat Methods. 2012. PMID: 22688414
We developed a method to reassemble a continuous volume from such large section series that explicitly minimizes artificial deformation by applying a global elastic constraint. We demonstrate our method on a series of transmission electron microscopy s …
We developed a method to reassemble a continuous volume from such large section series that explicitly minimizes artificial de …
Current challenges in open-source bioimage informatics.
Cardona A, Tomancak P. Cardona A, et al. Nat Methods. 2012 Jun 28;9(7):661-5. doi: 10.1038/nmeth.2082. Nat Methods. 2012. PMID: 22743770
Neuronal fiber tracts connecting the brain and ventral nerve cord of the early Drosophila larva.
Cardona A, Larsen C, Hartenstein V. Cardona A, et al. J Comp Neurol. 2009 Aug 1;515(4):427-40. doi: 10.1002/cne.22086. J Comp Neurol. 2009. PMID: 19459219 Free PMC article.
The anterolateral cluster represents a lineage derived from a single neuroblast. Terminations of descending neurons are almost exclusively found in the anterior part of the ventral nerve cord, represented by the gnathal and thoracic neuromeres. ...This work provides …
The anterolateral cluster represents a lineage derived from a single neuroblast. Terminations of descending neurons are almost …
Neurobiology of the basal platyhelminth Macrostomum lignano: map and digital 3D model of the juvenile brain neuropile.
Morris J, Cardona A, De Miguel-Bonet Mdel M, Hartenstein V. Morris J, et al. Dev Genes Evol. 2007 Aug;217(8):569-84. doi: 10.1007/s00427-007-0166-z. Epub 2007 Jul 5. Dev Genes Evol. 2007. PMID: 17611771
The brain forms a ganglion with a central neuropile surrounded by a cortex of neuronal cell bodies. The neuropile contains a stereotypical array of compact axon bundles, as well as branched terminal axons and dendrites. ...Commissural axon bundles defi …
The brain forms a ganglion with a central neuropile surrounded by a cortex of neuronal cell bodies. The neuropile conta …
CATMAID: collaborative annotation toolkit for massive amounts of image data.
Saalfeld S, Cardona A, Hartenstein V, Tomancak P. Saalfeld S, et al. Bioinformatics. 2009 Aug 1;25(15):1984-6. doi: 10.1093/bioinformatics/btp266. Epub 2009 Apr 17. Bioinformatics. 2009. PMID: 19376822 Free PMC article.
Inspired by online mapping applications like GoogleMaps, we developed a decentralized web interface that allows seamless navigation of arbitrarily large image stacks. ...
Inspired by online mapping applications like GoogleMaps, we developed a decentralized web interface that allows seamless navigation o …
390 results
Jump to page
Feedback