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Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids.
Zhang F, Carothers JM, Keasling JD. Zhang F, et al. Among authors: carothers jm. Nat Biotechnol. 2012 Mar 25;30(4):354-9. doi: 10.1038/nbt.2149. Nat Biotechnol. 2012. PMID: 22446695
Measurement and modeling of intrinsic transcription terminators.
Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Cambray G, et al. Among authors: carothers jm. Nucleic Acids Res. 2013 May;41(9):5139-48. doi: 10.1093/nar/gkt163. Epub 2013 Mar 19. Nucleic Acids Res. 2013. PMID: 23511967 Free PMC article.
Chemical synthesis using synthetic biology.
Carothers JM, Goler JA, Keasling JD. Carothers JM, et al. Curr Opin Biotechnol. 2009 Aug;20(4):498-503. doi: 10.1016/j.copbio.2009.08.001. Epub 2009 Aug 31. Curr Opin Biotechnol. 2009. PMID: 19720519 Review.
Prospects for engineering dynamic CRISPR-Cas transcriptional circuits to improve bioproduction.
Fontana J, Voje WE, Zalatan JG, Carothers JM. Fontana J, et al. Among authors: carothers jm. J Ind Microbiol Biotechnol. 2018 Jul;45(7):481-490. doi: 10.1007/s10295-018-2039-z. Epub 2018 May 8. J Ind Microbiol Biotechnol. 2018. PMID: 29740742 Review.
Measurement and modeling of intrinsic transcription terminators.
Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Cambray G, et al. Among authors: carothers jm. Nucleic Acids Res. 2016 Aug 19;44(14):7006. doi: 10.1093/nar/gkw379. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131373 Free PMC article. No abstract available.
In vitro selection of RNA aptamers against a composite small molecule-protein surface.
Plummer KA, Carothers JM, Yoshimura M, Szostak JW, Verdine GL. Plummer KA, et al. Among authors: carothers jm. Nucleic Acids Res. 2005 Sep 30;33(17):5602-10. doi: 10.1093/nar/gki867. Print 2005. Nucleic Acids Res. 2005. PMID: 16199752 Free PMC article.
Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity.
Carothers JM, Goler JA, Kapoor Y, Lara L, Keasling JD. Carothers JM, et al. Nucleic Acids Res. 2010 May;38(8):2736-47. doi: 10.1093/nar/gkq082. Epub 2010 Feb 16. Nucleic Acids Res. 2010. PMID: 20159999 Free PMC article.
Digital logic circuits in yeast with CRISPR-dCas9 NOR gates.
Gander MW, Vrana JD, Voje WE, Carothers JM, Klavins E. Gander MW, et al. Among authors: carothers jm. Nat Commun. 2017 May 25;8:15459. doi: 10.1038/ncomms15459. Nat Commun. 2017. PMID: 28541304 Free PMC article.
Kinetic folding design of aptazyme-regulated expression devices as riboswitches for metabolic engineering.
Sparkman-Yager D, Correa-Rojas RA, Carothers JM. Sparkman-Yager D, et al. Among authors: carothers jm. Methods Enzymol. 2015;550:321-40. doi: 10.1016/bs.mie.2014.10.038. Epub 2014 Dec 26. Methods Enzymol. 2015. PMID: 25605393
Regulated Expression of sgRNAs Tunes CRISPRi in E. coli.
Fontana J, Dong C, Ham JY, Zalatan JG, Carothers JM. Fontana J, et al. Among authors: carothers jm. Biotechnol J. 2018 Sep;13(9):e1800069. doi: 10.1002/biot.201800069. Epub 2018 May 11. Biotechnol J. 2018. PMID: 29635744
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