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Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.
Branquinho R, Meirinhos-Soares L, Carriço JA, Pintado M, Peixe LV. Branquinho R, et al. FEMS Microbiol Ecol. 2014 Dec;90(3):689-98. doi: 10.1111/1574-6941.12426. Epub 2014 Oct 6. FEMS Microbiol Ecol. 2014. PMID: 25230950
Properties of novel international drug-resistant pneumococcal clones identified in day-care centers of Lisbon, Portugal.
Sousa NG, Sá-Leão R, Crisóstomo MI, Simas C, Nunes S, Frazão N, Carriço JA, Mato R, Santos-Sanches I, de Lencastre H. Sousa NG, et al. J Clin Microbiol. 2005 Sep;43(9):4696-703. doi: 10.1128/JCM.43.9.4696-4703.2005. J Clin Microbiol. 2005. PMID: 16145129 Free PMC article.
Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.
Faria NA, Carrico JA, Oliveira DC, Ramirez M, de Lencastre H. Faria NA, et al. J Clin Microbiol. 2008 Jan;46(1):136-44. doi: 10.1128/JCM.01684-07. Epub 2007 Nov 7. J Clin Microbiol. 2008. PMID: 17989188 Free PMC article.
Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance.
Simões AS, Sá-Leão R, Eleveld MJ, Tavares DA, Carriço JA, Bootsma HJ, Hermans PW. Simões AS, et al. J Clin Microbiol. 2010 Jan;48(1):238-46. doi: 10.1128/JCM.01313-09. Epub 2009 Nov 11. J Clin Microbiol. 2010. PMID: 19906899 Free PMC article.
Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype.
Sá-Leão R, Pinto F, Aguiar S, Nunes S, Carriço JA, Frazão N, Gonçalves-Sousa N, Melo-Cristino J, de Lencastre H, Ramirez M. Sá-Leão R, et al. J Clin Microbiol. 2011 Apr;49(4):1369-75. doi: 10.1128/JCM.01763-10. Epub 2011 Jan 26. J Clin Microbiol. 2011. PMID: 21270219 Free PMC article.
Adjusted Wallace coefficient as a measure of congruence between typing methods.
Severiano A, Pinto FR, Ramirez M, Carriço JA. Severiano A, et al. J Clin Microbiol. 2011 Nov;49(11):3997-4000. doi: 10.1128/JCM.00624-11. Epub 2011 Sep 14. J Clin Microbiol. 2011. PMID: 21918028 Free PMC article.
Bacillus invictae sp. nov., isolated from a health product.
Branquinho R, Sousa C, Osório H, Meirinhos-Soares L, Lopes J, Carriço JA, Busse HJ, Abdulmawjood A, Klein G, Kämpfer P, Pintado ME, Peixe LV. Branquinho R, et al. Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3867-3876. doi: 10.1099/ijs.0.067850-0. Epub 2014 Aug 29. Int J Syst Evol Microbiol. 2014. PMID: 25171924
Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis.
Teixeira AS, Monteiro PT, Carriço JA, Ramirez M, Francisco AP. Teixeira AS, et al. PLoS One. 2015 Mar 23;10(3):e0119315. doi: 10.1371/journal.pone.0119315. eCollection 2015. PLoS One. 2015. PMID: 25799056 Free PMC article.
Comparing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Phenotypic and Molecular Methods for Identification of Species within the Streptococcus anginosus Group.
Arinto-Garcia R, Pinho MD, Carriço JA, Melo-Cristino J, Ramirez M. Arinto-Garcia R, et al. J Clin Microbiol. 2015 Nov;53(11):3580-8. doi: 10.1128/JCM.01892-15. Epub 2015 Sep 9. J Clin Microbiol. 2015. PMID: 26354817 Free PMC article.
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