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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1972 1
1975 1
1984 1
1985 2
1986 1
1987 5
1988 3
1989 5
1990 3
1991 3
1992 5
1993 3
1994 2
1995 8
1996 5
1997 8
1998 5
1999 4
2000 5
2001 4
2002 4
2003 6
2004 6
2005 9
2006 5
2007 9
2008 7
2009 8
2010 12
2011 6
2012 3
2013 2
2014 4
2015 7
2016 5
2017 1
2018 2
2019 5
2020 0
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169 results
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Page 1
Sequence and Expression Differences Underlie Functional Specialization of Arabidopsis MicroRNAs miR159 and miR319.
Palatnik JF, Wollmann H, Schommer C, Schwab R, Boisbouvier J, Rodriguez R, Warthmann N, Allen E, Dezulian T, Huson D, Carrington JC, Weigel D. Palatnik JF, et al. Among authors: Carrington JC. Dev Cell. 2019 Oct 7;51(1):129. doi: 10.1016/j.devcel.2019.09.016. Dev Cell. 2019. PMID: 31593649 No abstract available.
Functional dissection of the ARGONAUTE7 promoter.
Hoyer JS, Pruneda-Paz JL, Breton G, Hassert MA, Holcomb EE, Fowler H, Bauer KM, Mreen J, Kay SA, Carrington JC. Hoyer JS, et al. Among authors: Carrington JC. Plant Direct. 2019 Jan 2;3(1):e00102. doi: 10.1002/pld3.102. eCollection 2019 Jan. Plant Direct. 2019. PMID: 31245750 Free PMC article.
Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence.
Gomez MA, Lin ZD, Moll T, Chauhan RD, Hayden L, Renninger K, Beyene G, Taylor NJ, Carrington JC, Staskawicz BJ, Bart RS. Gomez MA, et al. Among authors: Carrington JC. Plant Biotechnol J. 2019 Feb;17(2):421-434. doi: 10.1111/pbi.12987. Epub 2018 Oct 5. Plant Biotechnol J. 2019. PMID: 30019807 Free PMC article.
Raspberry Pi-powered imaging for plant phenotyping.
Tovar JC, Hoyer JS, Lin A, Tielking A, Callen ST, Elizabeth Castillo S, Miller M, Tessman M, Fahlgren N, Carrington JC, Nusinow DA, Gehan MA. Tovar JC, et al. Among authors: Carrington JC. Appl Plant Sci. 2018 Mar 31;6(3):e1031. doi: 10.1002/aps3.1031. eCollection 2018 Mar. Appl Plant Sci. 2018. PMID: 29732261 Free PMC article.
CG gene body DNA methylation changes and evolution of duplicated genes in cassava.
Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. Wang H, et al. Among authors: Carrington JC. Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13729-34. doi: 10.1073/pnas.1519067112. Epub 2015 Oct 19. Proc Natl Acad Sci U S A. 2015. PMID: 26483493 Free PMC article.
Antiviral roles of plant ARGONAUTES.
Carbonell A, Carrington JC. Carbonell A, et al. Among authors: Carrington JC. Curr Opin Plant Biol. 2015 Oct;27:111-7. doi: 10.1016/j.pbi.2015.06.013. Epub 2015 Jul 17. Curr Opin Plant Biol. 2015. PMID: 26190744 Free PMC article. Review.
A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria.
Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, Hill ST, McEntee CJ, Warnasooriya SN, Kumar I, Ficor T, Turnipseed S, Gilbert KB, Brutnell TP, Carrington JC, Mockler TC, Baxter I. Fahlgren N, et al. Among authors: Carrington JC. Mol Plant. 2015 Oct 5;8(10):1520-35. doi: 10.1016/j.molp.2015.06.005. Epub 2015 Jun 20. Mol Plant. 2015. PMID: 26099924 Free article.
Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection.
Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert KB, Takeda A, Giampetruzzi A, Garcia Ruiz MT, McGinn MG, Lowery N, Martinez Baladejo MT, Carrington JC. Garcia-Ruiz H, et al. Among authors: Carrington JC. PLoS Pathog. 2015 Mar 25;11(3):e1004755. doi: 10.1371/journal.ppat.1004755. eCollection 2015 Mar. PLoS Pathog. 2015. PMID: 25806948 Free PMC article.
Correction. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip mosaic virus infection.
Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, Brempelis KJ, Carrington JC. Garcia-Ruiz H, et al. Among authors: Carrington JC. Plant Cell. 2015 Mar;27(3):944-5. doi: 10.1105/tpc.15.00204. Epub 2015 Mar 17. Plant Cell. 2015. PMID: 25783032 Free PMC article. No abstract available.
Preparation of Multiplexed Small RNA Libraries From Plants.
Gilbert KB, Fahlgren N, Kasschau KD, Chapman EJ, Carrington JC, Carbonell A. Gilbert KB, et al. Among authors: Carrington JC. Bio Protoc. 2014 Nov 5;4(21):e1275. doi: 10.21769/bioprotoc.1275. Bio Protoc. 2014. PMID: 26661568 Free PMC article.
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.
Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ. Jeong DH, et al. Among authors: Carrington JC. Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145. Genome Biol. 2013. PMID: 24367943 Free PMC article.
Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs.
Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC. Fahlgren N, et al. Among authors: Carrington JC. PLoS One. 2013 Oct 21;8(10):e77181. doi: 10.1371/journal.pone.0077181. eCollection 2013. PLoS One. 2013. PMID: 24204767 Free PMC article.
Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants.
Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, Nguyen T, Cuperus JT, Carrington JC. Carbonell A, et al. Among authors: Carrington JC. Plant Cell. 2012 Sep;24(9):3613-29. doi: 10.1105/tpc.112.099945. Epub 2012 Sep 28. Plant Cell. 2012. PMID: 23023169 Free PMC article.
Virus-derived gene expression and RNA interference vector for grapevine.
Kurth EG, Peremyslov VV, Prokhnevsky AI, Kasschau KD, Miller M, Carrington JC, Dolja VV. Kurth EG, et al. Among authors: Carrington JC. J Virol. 2012 Jun;86(11):6002-9. doi: 10.1128/JVI.00436-12. Epub 2012 Mar 21. J Virol. 2012. PMID: 22438553 Free PMC article.
The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications.
Fischer SE, Montgomery TA, Zhang C, Fahlgren N, Breen PC, Hwang A, Sullivan CM, Carrington JC, Ruvkun G. Fischer SE, et al. Among authors: Carrington JC. PLoS Genet. 2011 Nov;7(11):e1002369. doi: 10.1371/journal.pgen.1002369. Epub 2011 Nov 10. PLoS Genet. 2011. PMID: 22102828 Free PMC article.
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, Van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL. Hu TT, et al. Among authors: Carrington JC. Nat Genet. 2011 May;43(5):476-81. doi: 10.1038/ng.807. Epub 2011 Apr 10. Nat Genet. 2011. PMID: 21478890 Free PMC article.
Identification of genes required for de novo DNA methylation in Arabidopsis.
Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. Greenberg MV, et al. Among authors: Carrington JC. Epigenetics. 2011 Mar;6(3):344-54. doi: 10.4161/epi.6.3.14242. Epub 2011 Mar 1. Epigenetics. 2011. PMID: 21150311 Free PMC article.
Evolution and functional diversification of MIRNA genes.
Cuperus JT, Fahlgren N, Carrington JC. Cuperus JT, et al. Among authors: Carrington JC. Plant Cell. 2011 Feb;23(2):431-42. doi: 10.1105/tpc.110.082784. Epub 2011 Feb 11. Plant Cell. 2011. PMID: 21317375 Free PMC article. Review.
mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans.
Zhang C, Montgomery TA, Gabel HW, Fischer SE, Phillips CM, Fahlgren N, Sullivan CM, Carrington JC, Ruvkun G. Zhang C, et al. Among authors: Carrington JC. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1201-8. doi: 10.1073/pnas.1018695108. Epub 2011 Jan 18. Proc Natl Acad Sci U S A. 2011. PMID: 21245313 Free PMC article.
GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.
Cumbie JS, Kimbrel JA, Di Y, Schafer DW, Wilhelm LJ, Fox SE, Sullivan CM, Curzon AD, Carrington JC, Mockler TC, Chang JH. Cumbie JS, et al. Among authors: Carrington JC. PLoS One. 2011;6(10):e25279. doi: 10.1371/journal.pone.0025279. Epub 2011 Oct 6. PLoS One. 2011. PMID: 21998647 Free PMC article.
Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex.
Smith KM, Sancar G, Dekhang R, Sullivan CM, Li S, Tag AG, Sancar C, Bredeweg EL, Priest HD, McCormick RF, Thomas TL, Carrington JC, Stajich JE, Bell-Pedersen D, Brunner M, Freitag M. Smith KM, et al. Among authors: Carrington JC. Eukaryot Cell. 2010 Oct;9(10):1549-56. doi: 10.1128/EC.00154-10. Epub 2010 Jul 30. Eukaryot Cell. 2010. PMID: 20675579 Free PMC article.
RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein.
Cosson P, Sofer L, Le QH, Léger V, Schurdi-Levraud V, Whitham SA, Yamamoto ML, Gopalan S, Le Gall O, Candresse T, Carrington JC, Revers F. Cosson P, et al. Among authors: Carrington JC. Plant Physiol. 2010 Sep;154(1):222-32. doi: 10.1104/pp.110.155754. Epub 2010 Jun 28. Plant Physiol. 2010. PMID: 20584941 Free PMC article.
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC. Cuperus JT, et al. Among authors: Carrington JC. Nat Struct Mol Biol. 2010 Aug;17(8):997-1003. doi: 10.1038/nsmb.1866. Epub 2010 Jun 18. Nat Struct Mol Biol. 2010. PMID: 20562854 Free PMC article.
Climate change and the integrity of science.
Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, Berenbaum MR, Berlin OB, Bjorkman PJ, Blackburn E, Blamont JE, Botchan MR, Boyer JS, Boyle EA, Branton D, Briggs SP, Briggs WR, Brill WJ, Britten RJ, Broecker WS, Brown JH, Brown PO, Brunger AT, Cairns J Jr, Canfield DE, Carpenter SR, Carrington JC, Cashmore AR, Castilla JC, Cazenave A, Chapin FS 3rd, Ciechanover AJ, Clapham DE, Clark WC, Clayton RN, Coe MD, Conwell EM, Cowling EB, Cowling RM, Cox CS, Croteau RB, Crothers DM, Crutzen PJ, Daily GC, Dalrymple GB, Dangl JL, Darst SA, Davies DR, Davis MB, De Camilli PV, Dean C, DeFries RS, Deisenhofer J, Delmer DP, DeLong EF, DeRosier DJ, Diener TO, Dirzo R, Dixon JE, Donoghue MJ, Doolittle RF, Dunne T, Ehrlich PR, Eisenstadt SN, Eisner T, Emanuel KA, Englander SW, Ernst WG, Falkowski PG, Feher G, Ferejohn JA, Fersht A, Fischer EH, Fischer R, Flannery KV, Frank J, Frey PA, Fridovich I, Frieden C, Futuyma DJ, Gardner WR, Garrett CJ, Gilbert W, Goldberg RB, Goodenough WH, Goodman CS, Goodman M, Greengard P, Hake S, Hammel G, Hanson S, Harrison SC, Hart SR, Hartl DL, Haselkorn R, Hawkes K, Hayes JM, Hille B, Hökfelt T, House JS, Hout M, Hunten DM, Izquierdo IA, Jagendorf AT, Janzen DH, Jeanloz R, Jencks CS, Jury WA, Kaback HR, Kailath T, Kay P, Kay SA, Kennedy D, Kerr A, Kessler RC, Khush GS, Kieffer SW, Kirch PV, Kirk K, Kivelson MG, Klinman JP, Klug A, Knopoff L, Kornberg H, Kutzbach JE, Lagarias JC, Lambeck K, Landy A, Langmuir CH, Larkins BA, Le Pichon XT, Lenski RE, Leopold EB, Levin SA, Levitt M, Likens GE, Lippincott-Schwartz J, Lorand L, Lovejoy CO, Lynch M, Mabogunje AL, Malone TF, Manabe S, Marcus J, Massey DS, McWilliams JC, Medina E, Melosh HJ, Meltzer DJ, Michener CD, Miles EL, Mooney HA, Moore PB, Morel FM, Mosley-Thompson ES, Moss B, Munk WH, Myers N, Nair GB, Nathans J, Nester EW, Nicoll RA, Novick RP, O'Connell JF, Olsen PE, Opdyke ND, Oster GF, Ostrom E, Pace NR, Paine RT, Palmiter RD, Pedlosky J, Petsko GA, Pettengill GH, Philander SG, Piperno DR, Pollard TD, Price PB Jr, Reichard PA, Reskin BF, Ricklefs RE, Rivest RL, Roberts JD, Romney AK, Rossmann MG, Russell DW, Rutter WJ, Sabloff JA, Sagdeev RZ, Sahlins MD, Salmond A, Sanes JR, Schekman R, Schellnhuber J, Schindler DW, Schmitt J, Schneider SH, Schramm VL, Sederoff RR, Shatz CJ, Sherman F, Sidman RL, Sieh K, Simons EL, Singer BH, Singer MF, Skyrms B, Sleep NH, Smith BD, Snyder SH, Sokal RR, Spencer CS, Steitz TA, Strier KB, Südhof TC, Taylor SS, Terborgh J, Thomas DH, Thompson LG, Tjian RT, Turner MG, Uyeda S, Valentine JW, Valentine JS, Van Etten JL, van Holde KE, Vaughan M, Verba S, von Hippel PH, Wake DB, Walker A, Walker JE, Watson EB, Watson PJ, Weigel D, Wessler SR, West-Eberhard MJ, White TD, Wilson WJ, Wolfenden RV, Wood JA, Woodwell GM, Wright HE Jr, Wu C, Wunsch C, Zoback ML. Gleick PH, et al. Among authors: Carrington JC. Science. 2010 May 7;328(5979):689-90. doi: 10.1126/science.328.5979.689. Science. 2010. PMID: 20448167 Free PMC article. No abstract available.
Small RNA duplexes function as mobile silencing signals between plant cells.
Dunoyer P, Schott G, Himber C, Meyer D, Takeda A, Carrington JC, Voinnet O. Dunoyer P, et al. Among authors: Carrington JC. Science. 2010 May 14;328(5980):912-6. doi: 10.1126/science.1185880. Epub 2010 Apr 22. Science. 2010. PMID: 20413458 Free article. Retracted.
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.
Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC. Fahlgren N, et al. Among authors: Carrington JC. Plant Cell. 2010 Apr;22(4):1074-89. doi: 10.1105/tpc.110.073999. Epub 2010 Apr 20. Plant Cell. 2010. PMID: 20407027 Free PMC article.
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection.
Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, Brempelis KJ, Carrington JC. Garcia-Ruiz H, et al. Among authors: Carrington JC. Plant Cell. 2010 Feb;22(2):481-96. doi: 10.1105/tpc.109.073056. Epub 2010 Feb 26. Plant Cell. 2010. PMID: 20190077 Free PMC article.
miRNA Target Prediction in Plants.
Fahlgren N, Carrington JC. Fahlgren N, et al. Among authors: Carrington JC. Methods Mol Biol. 2010;592:51-7. doi: 10.1007/978-1-60327-005-2_4. Methods Mol Biol. 2010. PMID: 19802588
Genome-wide profiling of populus small RNAs.
Klevebring D, Street NR, Fahlgren N, Kasschau KD, Carrington JC, Lundeberg J, Jansson S. Klevebring D, et al. Among authors: Carrington JC. BMC Genomics. 2009 Dec 20;10:620. doi: 10.1186/1471-2164-10-620. BMC Genomics. 2009. PMID: 20021695 Free PMC article.
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing.
Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC. Cuperus JT, et al. Among authors: Carrington JC. Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):466-71. doi: 10.1073/pnas.0913203107. Epub 2009 Dec 14. Proc Natl Acad Sci U S A. 2010. PMID: 20018656 Free PMC article.
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.
Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ. Ha M, et al. Among authors: Carrington JC. Version 2. Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17835-40. doi: 10.1073/pnas.0907003106. Epub 2009 Oct 5. Proc Natl Acad Sci U S A. 2009. PMID: 19805056 Free PMC article.
Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.
Gu W, Shirayama M, Conte D Jr, Vasale J, Batista PJ, Claycomb JM, Moresco JJ, Youngman EM, Keys J, Stoltz MJ, Chen CC, Chaves DA, Duan S, Kasschau KD, Fahlgren N, Yates JR 3rd, Mitani S, Carrington JC, Mello CC. Gu W, et al. Among authors: Carrington JC. Mol Cell. 2009 Oct 23;36(2):231-44. doi: 10.1016/j.molcel.2009.09.020. Epub 2009 Oct 1. Mol Cell. 2009. PMID: 19800275 Free PMC article.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.
Haas BJ, Kamoun S, Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T, Bozkurt TO, Ah-Fong AM, Alvarado L, Anderson VL, Armstrong MR, Avrova A, Baxter L, Beynon J, Boevink PC, Bollmann SR, Bos JI, Bulone V, Cai G, Cakir C, Carrington JC, Chawner M, Conti L, Costanzo S, Ewan R, Fahlgren N, Fischbach MA, Fugelstad J, Gilroy EM, Gnerre S, Green PJ, Grenville-Briggs LJ, Griffith J, Grünwald NJ, Horn K, Horner NR, Hu CH, Huitema E, Jeong DH, Jones AM, Jones JD, Jones RW, Karlsson EK, Kunjeti SG, Lamour K, Liu Z, Ma L, Maclean D, Chibucos MC, McDonald H, McWalters J, Meijer HJ, Morgan W, Morris PF, Munro CA, O'Neill K, Ospina-Giraldo M, Pinzón A, Pritchard L, Ramsahoye B, Ren Q, Restrepo S, Roy S, Sadanandom A, Savidor A, Schornack S, Schwartz DC, Schumann UD, Schwessinger B, Seyer L, Sharpe T, Silvar C, Song J, Studholme DJ, Sykes S, Thines M, van de Vondervoort PJ, Phuntumart V, Wawra S, Weide R, Win J, Young C, Zhou S, Fry W, Meyers BC, van West P, Ristaino J, Govers F, Birch PR, Whisson SC, Judelson HS, Nusbaum C. Haas BJ, et al. Among authors: Carrington JC. Nature. 2009 Sep 17;461(7262):393-8. doi: 10.1038/nature08358. Epub 2009 Sep 9. Nature. 2009. PMID: 19741609
Computational and analytical framework for small RNA profiling by high-throughput sequencing.
Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC. Fahlgren N, et al. Among authors: Carrington JC. RNA. 2009 May;15(5):992-1002. doi: 10.1261/rna.1473809. Epub 2009 Mar 23. RNA. 2009. PMID: 19307293 Free PMC article.
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