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A combination of neutral loss and targeted product ion scanning with two enzymatic digestions facilitates the comprehensive mapping of phosphorylation sites.
Casado-Vela J, Ruiz EJ, Nebreda AR, Casal JI. Casado-Vela J, et al. Proteomics. 2007 Aug;7(15):2522-9. doi: 10.1002/pmic.200700026. Proteomics. 2007. PMID: 17610206
Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs).
Lopitz-Otsoa F, Rodriguez-Suarez E, Aillet F, Casado-Vela J, Lang V, Matthiesen R, Elortza F, Rodriguez MS. Lopitz-Otsoa F, et al. J Proteomics. 2012 Jun 6;75(10):2998-3014. doi: 10.1016/j.jprot.2011.12.001. Epub 2011 Dec 10. J Proteomics. 2012. PMID: 22178446
iTRAQ-based quantitative analysis of protein mixtures with large fold change and dynamic range.
Casado-Vela J, Martínez-Esteso MJ, Rodriguez E, Borrás E, Elortza F, Bru-Martínez R. Casado-Vela J, et al. Proteomics. 2010 Jan;10(2):343-7. doi: 10.1002/pmic.200900509. Proteomics. 2010. PMID: 20029838
Human urine proteomics: building a list of human urine cancer biomarkers.
Casado-Vela J, Gómez del Pulgar T, Cebrián A, Alvarez-Ayerza N, Lacal JC. Casado-Vela J, et al. Expert Rev Proteomics. 2011 Jun;8(3):347-60. doi: 10.1586/epr.11.26. Expert Rev Proteomics. 2011. PMID: 21679116 Review.
Lights and shadows of proteomic technologies for the study of protein species including isoforms, splicing variants and protein post-translational modifications.
Casado-Vela J, Cebrián A, Gómez del Pulgar MT, Sánchez-López E, Vilaseca M, Menchén L, Diema C, Sellés-Marchart S, Martínez-Esteso MJ, Yubero N, Bru-Martínez R, Lacal JC. Casado-Vela J, et al. Proteomics. 2011 Feb;11(4):590-603. doi: 10.1002/pmic.201000287. Epub 2011 Jan 13. Proteomics. 2011. PMID: 21229583 Review.
Protein chimerism: novel source of protein diversity in humans adds complexity to bottom-up proteomics.
Casado-Vela J, Lacal JC, Elortza F. Casado-Vela J, et al. Proteomics. 2013 Jan;13(1):5-11. doi: 10.1002/pmic.201200371. Epub 2012 Dec 12. Proteomics. 2013. PMID: 23161619
Differential phosphorylation patterns between the Cyclin-A2/CDK2 complex and their monomers.
Casado-Vela J, Martínez-Torrecuadrada JL, Casal JI. Casado-Vela J, et al. Protein Expr Purif. 2009 Jul;66(1):15-21. doi: 10.1016/j.pep.2009.02.007. Epub 2009 Feb 20. Protein Expr Purif. 2009. PMID: 19233286
Proteomic approach to blossom-end rot in tomato fruits (Lycopersicon esculentum M.): antioxidant enzymes and the pentose phosphate pathway.
Casado-Vela J, Sellés S, Bru Martínez R. Casado-Vela J, et al. Proteomics. 2005 Jul;5(10):2488-96. doi: 10.1002/pmic.200401146. Proteomics. 2005. PMID: 15892162
High-throughgput phage-display screening in array format.
Díez P, Jara-Acevedo R, González-González M, Casado-Vela J, Dasilva N, Lécrevisse Q, Bartolomé R, Claros JC, González A, López R, Orfao A, Fuentes M. Díez P, et al. Among authors: casado vela j. Enzyme Microb Technol. 2015 Nov;79-80:34-41. doi: 10.1016/j.enzmictec.2015.06.016. Epub 2015 Jul 14. Enzyme Microb Technol. 2015. PMID: 26320712
Cohesin organizes chromatin loops at DNA replication factories.
Guillou E, Ibarra A, Coulon V, Casado-Vela J, Rico D, Casal I, Schwob E, Losada A, Méndez J. Guillou E, et al. Genes Dev. 2010 Dec 15;24(24):2812-22. doi: 10.1101/gad.608210. Genes Dev. 2010. PMID: 21159821 Free PMC article.
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