Ceccarelli M - Search Results

1

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes.

Mall R, Cerulo L, Garofano L, Frattini V, Kunji K, Bensmail H, Sabedot TS, Noushmehr H, Lasorella A, Iavarone A, Ceccarelli M. Mall R, et al. Among authors: ceccarelli m. Nucleic Acids Res. 2018 Apr 20;46(7):e39. doi: 10.1093/nar/gky015. Nucleic Acids Res. 2018. PMID: 29361062 Free PMC article.

2

Learning gene regulatory networks from only positive and unlabeled data.

Cerulo L, Elkan C, Ceccarelli M. Cerulo L, et al. Among authors: ceccarelli m. BMC Bioinformatics. 2010 May 5;11:228. doi: 10.1186/1471-2105-11-228. BMC Bioinformatics. 2010. PMID: 20444264 Free PMC article.

3

VEGA: variational segmentation for copy number detection.

Morganella S, Cerulo L, Viglietto G, Ceccarelli M. Morganella S, et al. Among authors: ceccarelli m. Bioinformatics. 2010 Dec 15;26(24):3020-7. doi: 10.1093/bioinformatics/btq586. Epub 2010 Oct 19. Bioinformatics. 2010. PMID: 20959380

4

Transforming fusions of FGFR and TACC genes in human glioblastoma.

Singh D, Chan JM, Zoppoli P, Niola F, Sullivan R, Castano A, Liu EM, Reichel J, Porrati P, Pellegatta S, Qiu K, Gao Z, Ceccarelli M, Riccardi R, Brat DJ, Guha A, Aldape K, Golfinos JG, Zagzag D, Mikkelsen T, Finocchiaro G, Lasorella A, Rabadan R, Iavarone A. Singh D, et al. Among authors: ceccarelli m. Science. 2012 Sep 7;337(6099):1231-5. doi: 10.1126/science.1220834. Epub 2012 Jul 26. Science. 2012. PMID: 22837387 Free PMC article.

5

A negative selection heuristic to predict new transcriptional targets.

Cerulo L, Paduano V, Zoppoli P, Ceccarelli M. Cerulo L, et al. Among authors: ceccarelli m. BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2105-14-S1-S3. Epub 2013 Jan 14. BMC Bioinformatics. 2013. PMID: 23368951 Free PMC article.

6

Ensemble of gene signatures identifies novel biomarkers in colorectal cancer activated through PPARγ and TNFα signaling.

Pagnotta SM, Laudanna C, Pancione M, Sabatino L, Votino C, Remo A, Cerulo L, Zoppoli P, Manfrin E, Colantuoni V, Ceccarelli M. Pagnotta SM, et al. Among authors: ceccarelli m. PLoS One. 2013 Aug 19;8(8):e72638. doi: 10.1371/journal.pone.0072638. eCollection 2013. PLoS One. 2013. PMID: 24133572 Free PMC article.

7

Identification of a novel gene signature of ES cells self-renewal fluctuation through system-wide analysis.

Cerulo L, Tagliaferri D, Marotta P, Zoppoli P, Russo F, Mazio C, DeFelice M, Ceccarelli M, Falco G. Cerulo L, et al. Among authors: ceccarelli m. PLoS One. 2014 Jan 2;9(1):e83235. doi: 10.1371/journal.pone.0083235. eCollection 2014. PLoS One. 2014. PMID: 24392082 Free PMC article.

8

De novo reconstruction of gene regulatory networks from time series data, an approach based on formal methods.

Ceccarelli M, Cerulo L, Santone A. Ceccarelli M, et al. Methods. 2014 Oct 1;69(3):298-305. doi: 10.1016/j.ymeth.2014.06.005. Epub 2014 Jun 21. Methods. 2014. PMID: 24960286

9

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer.

Remo A, Simeone I, Pancione M, Parcesepe P, Finetti P, Cerulo L, Bensmail H, Birnbaum D, Van Laere SJ, Colantuoni V, Bonetti F, Bertucci F, Manfrin E, Ceccarelli M. Remo A, et al. Among authors: ceccarelli m. J Transl Med. 2015 May 1;13:138. doi: 10.1186/s12967-015-0492-2. J Transl Med. 2015. PMID: 25928084 Free PMC article.

10

VEGAWES: variational segmentation on whole exome sequencing for copy number detection.

Anjum S, Morganella S, D'Angelo F, Iavarone A, Ceccarelli M. Anjum S, et al. Among authors: ceccarelli m. BMC Bioinformatics. 2015 Sep 29;16:315. doi: 10.1186/s12859-015-0748-0. BMC Bioinformatics. 2015. PMID: 26416038 Free PMC article.

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